Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0551 ATGAGAGAGGAGCAAGGTGGAGGAGCCATGGTGGTGGAGCGGCGGAGCGGATTGAATCGGAAGAGATTTGGATCCTATTTGCAGTCTGATCCGCCGATTTTTTCCGGGGATGAGAATGAATTCTCTGCCCGACACAGCAATGCCTCCGCTGCCACGAGTTCGGTGTTTAACTACGATAAATCTCCGGCGAGCGGTGATGCTTCGCCGTACTTGATGTCGCCGTGGAATCAGTCCGCTTCTCCGTATTCGAAATCGCCGTGGATTTTTCAGTCGGAGGCGAATCTGAGCGATGATGAATTTTACGCTCGGAATGGACTGATTGGATCTCTGGTTAGAGAGGATGGTCATGTGTATTCGTTGGCTGTGGCGGGGGATTTGTTGTACACTGGATCGGATGGCAAGAACATTCGTGTGTGGAAGAATTTGAAGGATTTCGCCGGTTTTAAATCCAGCAGTGGATTGGTGAAGGCGATTATCTTGTGCGGAGAGAGGATTTTCACCGGACATCAAGATGGAAAGATTCGAATCTGGAAAGTTTCGTCGAAGAATCCGAGATCTCATAGCCGAATTGGAAGCCTACCGACGTTGAAGGAATTCGTCAAAAGCTCGATCGATCCGAGAAATTACATGAAAATCCGGCGCAACCGCAACGTCCTCCGTATCAAGCATTTCGACGCCGTTTCCTCGATGAGCCTGAACGAGGAGTTAGGACTTTTGTACTCTGGATCTTGGGATAAAACGATGAAGGTCTGGCGAATCGCGGATTCGAAATGTCTCGAATCAATCACCGCTCACGACGACGCCGTGAACGCCGTCGCGTCGGGATTGGAGAGCCTGGTATTCACCGGATCCGCCGATGGAACAGTGAAGGTCTGGCGGAGGGAGTTGGAGGGAAAAGGCACGAAGCATTTTCTTGTTCAGGTATTGCTGAAGCAGGAAAACGCGGTGACGGCGTTGGCCGTGAACCGGTCGTCGGCGGTGGTTTACTGCGGTACGTCGGATGGAGTTGTTAATTATTGGGAGAGCGAGAAGCATTTGTCTCACGGCGGCATCCTCCGCGGCCACAAACTAGCGGTGCTGTGTCTAGCGACGGCCGGAAACTTGGTATTCAGTGGATCGGCGGACAAAAACATCTGCGTGTGGCGGAGGGACGAGAACGGCGGATCTCACACGTGTCTATCGGTTCTAACCGGCCACTCAGGGCCGGTCAAATGCTTAGCCGTAAAGGAAGACGAAGAAGAATCGCCATTGCCGCCGGTGGAGGAAAGCGTGATGAAAAAGCTCTATGGCAGTTATGGTAGTAACCGGCGGTGGATTGTGTACAGTGGAAGCTTGGACCGGTCGGTGAAGGTGTGGCGCGTGGCGGAGAACACGCCGGAGCTGTTCAAGTTACGGGAGGCGGAGCGGCCGTACAAGTAA 1419 53.0 MREEQGGGAMVVERRSGLNRKRFGSYLQSDPPIFSGDENEFSARHSNASAATSSVFNYDKSPASGDASPYLMSPWNQSASPYSKSPWIFQSEANLSDDEFYARNGLIGSLVREDGHVYSLAVAGDLLYTGSDGKNIRVWKNLKDFAGFKSSSGLVKAIILCGERIFTGHQDGKIRIWKVSSKNPRSHSRIGSLPTLKEFVKSSIDPRNYMKIRRNRNVLRIKHFDAVSSMSLNEELGLLYSGSWDKTMKVWRIADSKCLESITAHDDAVNAVASGLESLVFTGSADGTVKVWRRELEGKGTKHFLVQVLLKQENAVTALAVNRSSAVVYCGTSDGVVNYWESEKHLSHGGILRGHKLAVLCLATAGNLVFSGSADKNICVWRRDENGGSHTCLSVLTGHSGPVKCLAVKEDEEESPLPPVEESVMKKLYGSYGSNRRWIVYSGSLDRSVKVWRVAENTPELFKLREAERPYK 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5589071 5591184 + Hsped.02g05510.1 Hepe02g0551 562052

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0551 472 CDD WD40 114 453 - -
Hepe02g0551 472 PRINTS G protein beta WD-40 repeat signature 440 454 IPR020472 -
Hepe02g0551 472 PRINTS G protein beta WD-40 repeat signature 280 294 IPR020472 -
Hepe02g0551 472 PRINTS G protein beta WD-40 repeat signature 239 253 IPR020472 -
Hepe02g0551 472 Pfam WD domain, G-beta repeat 114 139 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 Pfam WD domain, G-beta repeat 222 251 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 Pfam WD domain, G-beta repeat 434 452 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 Pfam WD domain, G-beta repeat 351 381 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 Pfam WD domain, G-beta repeat 257 292 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 Gene3D - 300 468 IPR015943 GO:0005515(InterPro)
Hepe02g0551 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 262 292 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 261 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 262 292 - -
Hepe02g0551 472 Gene3D - 208 299 IPR015943 GO:0005515(InterPro)
Hepe02g0551 472 SMART WD40_4 389 453 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 SMART WD40_4 214 252 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 SMART WD40_4 103 140 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 SMART WD40_4 141 178 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 SMART WD40_4 302 341 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 SMART WD40_4 345 382 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 SMART WD40_4 255 293 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 ProSiteProfiles Trp-Asp (WD) repeats profile. 352 381 IPR001680 GO:0005515(InterPro)
Hepe02g0551 472 SUPERFAMILY WD40 repeat-like 108 459 IPR036322 GO:0005515(InterPro)
Hepe02g0551 472 Gene3D - 94 206 IPR015943 GO:0005515(InterPro)
Hepe02g0551 472 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 253 - -
Hepe02g0551 472 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 54 456 IPR045182 -
Hepe02g0551 472 FunFam BnaA09g28200D protein 210 297 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0551 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0551 Hepe-Chr2:5589071 Hepe10g0885 Hepe-Chr10:23858473 3.01e-129 dispersed
Hepe02g0551 Hepe-Chr2:5589071 HepeContig66g0022 Hepe-ChrContig66:3107357 1.06e-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g527 . Blo15g00718 Bda06g01024 Bda08g01318 Bpe07g00404 Bpe12g00071 . Bma12g00483 Cmo19g00652 Cmo11g01329 . . . . Sed11g0992 . . Bhi05g01171 Tan02g1913 Cmetu03g1602 . Hepe02g0551 . . Cla02g00560 Cam02g0588 Cec02g0589 Cco02g0600 Clacu02g0586 Cmu02g0584 Cre02g0914 . . . . . Csa07g00816 . . . Blo13g00559 Bda15g00021 Bda14g00532 . . . . . . . Cma11g01780 Cma19g00639 . . . . . . . . . . . . . . . . . . . . Chy01g00013 .
Vvi18g860 Blo01g01543 Blo12g00920 Bda01g00554 Bda03g00243 Bpe02g00412 . Bma04g00193 . Cmo05g00221 Cmo12g00448 . Cma09g00180 . . Sed10g2068 . . Bhi04g00295 Tan02g0857 Cmetu01g0434 . Hepe02g0551 . . Cla08g01527 Cam08g2019 Cec08g1593 Cco08g1730 Clacu08g1708 . Cre08g1489 . . . . . Csa03g04173 Chy04g00544 . Blo17g00826 . Bda08g01311 . . . . Bma05g00099 . Cmo01g01944 Cmo09g00176 Cma12g00505 Cma05g00214 . . . . . . . . . . . Cla05g01970 Cam05g2121 Cec05g2132 Cco05g2184 Clacu05g2109 Cmu05g1985 Cre05g2104 . Csa02g02011 Chy03g01498 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009507 6 1 2 1 2 1 0 1 1 1 1 1 2 0 1 2 1 0 0 1 1 1 1 1 0 0 1 1 1 1 33