Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0579 ATGCCGTTAGCCCGTGGTTTAACGAGTCCTCTAAGCCCATTGAGCCTAGGCCCAGGCCCAATCCACATCTTCATCTTCATCTTCTCTGTTCACTTTCGTTTGAATTCAAATCGAAGTCCAGAGTTCTCTGTATTGGCGCTCGAAATTCTCTGTCAAGGACCCATCACCAGAAAATTCGAAGAAAACAAGCTTCAGTTCAGCCAGGGATCTTTTGCTTCATTTCAACGGAAAATGGTGGAATCGAACTTGACTTACGAGGAATGCCGACGCCAGAGGTTGGAGGAGAATAAGAAGAGAATGGAAGAGCTTAATCTGAACAAACTTGTCGATGCTCTGAAATCTTCCAGCCCTAAATCCTCTCCGACGAAACAGCTAAAGCGTCCTCGCCAACCACTCGATACCTCGTCCCTCAGTGTGAGAAGGTCCAGCCGTTTTACTGATAAGCCCCCTCCTAACTATAAGGAGCTGCCCATTGAACCACTTCAAGGTCTCAGAAGGACTTATGAACGGAGAGATTTGTTGAATCGGGTTTATGCTTCACATGAAGAAAGACATTATGCTATTGACAGAGCACGAGACCTTCAATCTAGTCTGGAATCTAGGTACCCAAGTTTTGTGAAGCCAATGCTTCAGTCACATGTCACCGGGGGATTTTGGCTGGGTCTTCCAGTTCAATTTTGCAAGACACACCTTCCCCACGAGGATGAAATGCTTACTCTGGTGGACGAGGATGAAAATGAGTTCCAAACAAAATACCTTGCCGATAAAACAGGTCTCAGTGGTGGTTGGAGAGGGTTTTCCATTGATCACCAGTTAGTAGATGGGGATGCTTTGGTCTTCCATTTAACTAAGCCAACTGAATTCAAGGTATATATCATCAGGGCATACAATTTAGAAGACAAAAAAGATACCAATGAGGATTCCGATGTCCCCCAATTGGAAAAAAGTGGCAAAAGTACGAAGATCAGGGCTAATAAATCTGAAGATAAAGAAGATCACGGCAAGGATTCCGACGCCTCCCAATTGGAAAAAAGTGGCAAAAGAACTACTAGATCATCAGGGCAAAAAACCAGGGCAAATAATTCTGAAGATAAAGCAGATAACGGCAAGGATTCCGACGTCTCCCAATTGGAAAAAAGTGGCAAAAGAACTAGATCATCAGGGCAAAAGACCAGGGCAAATAATTCTGAAGATAAAGCAGATAACGTTGAGGAAACCAATGTCTCCCAGTTGGAAAAAAGTGGCAAAAGAACTACTAGATCATCAGCAAGTAAAGGGAAGAAGTAA 1287 43.82 MPLARGLTSPLSPLSLGPGPIHIFIFIFSVHFRLNSNRSPEFSVLALEILCQGPITRKFEENKLQFSQGSFASFQRKMVESNLTYEECRRQRLEENKKRMEELNLNKLVDALKSSSPKSSPTKQLKRPRQPLDTSSLSVRRSSRFTDKPPPNYKELPIEPLQGLRRTYERRDLLNRVYASHEERHYAIDRARDLQSSLESRYPSFVKPMLQSHVTGGFWLGLPVQFCKTHLPHEDEMLTLVDEDENEFQTKYLADKTGLSGGWRGFSIDHQLVDGDALVFHLTKPTEFKVYIIRAYNLEDKKDTNEDSDVPQLEKSGKSTKIRANKSEDKEDHGKDSDASQLEKSGKRTTRSSGQKTRANNSEDKADNGKDSDVSQLEKSGKRTRSSGQKTRANNSEDKADNVEETNVSQLEKSGKRTTRSSASKGKK 428
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5887397 5890480 + Hsped.02g05790.1 Hepe02g0579 562080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0579 428 MobiDBLite consensus disorder prediction 358 385 - -
Hepe02g0579 428 ProSiteProfiles B3 DNA-binding domain profile. 205 296 IPR003340 GO:0003677(InterPro)
Hepe02g0579 428 Coils Coil 83 103 - -
Hepe02g0579 428 Gene3D - 180 298 IPR015300 -
Hepe02g0579 428 MobiDBLite consensus disorder prediction 302 428 - -
Hepe02g0579 428 SUPERFAMILY DNA-binding pseudobarrel domain 198 295 IPR015300 -
Hepe02g0579 428 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 70 299 IPR044837 -
Hepe02g0579 428 MobiDBLite consensus disorder prediction 392 406 - -
Hepe02g0579 428 MobiDBLite consensus disorder prediction 302 345 - -
Hepe02g0579 428 Pfam B3 DNA binding domain 205 294 IPR003340 GO:0003677(InterPro)
Hepe02g0579 428 MobiDBLite consensus disorder prediction 111 145 - -
Hepe02g0579 428 SMART B3_2 205 296 IPR003340 GO:0003677(InterPro)
Hepe02g0579 428 MobiDBLite consensus disorder prediction 111 157 - -
Hepe02g0579 428 CDD B3_DNA 203 294 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0716 Hepe-Chr10:9594584 Hepe02g0579 Hepe-Chr2:5887397 3.49e-64 transposed
Hepe02g0579 Hepe-Chr2:5887397 Hepe07g0475 Hepe-Chr7:4897169 8.79e-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54980 PF02362 B3 2.30E-15 CL0405 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0579 - - - 0.0