Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0582 ATGAAAAAATACAAAATGTCCCTTCTGAATTCCATCTTCTTCTTCTTCTTCCTCCTCCTCCTCCGCTTCTCCTCCGCCTCTCCACCCAGTCCTAGAGGGTATCTTCTCAATTGCGGCGCCACCGAATTGGACGCCAAGGTCACCATCGGCAGCCTCCAGTACATCACCGACGAGGGCTTCACCTCCGTTGGAAACATCACCAAGCTCCCCGATCCAAATCTCGTGCCGATTCTCTCCTCATTGCGCTATTTCCCCGACAAATCGGCCCGGAAATACTGCTACGCGATTCCGGTCGTTAAGGGAGGCAAATACCTTGTGAGGACGACGTATTACTACGGTGGATACGACGGCGGAAAGGAGCCTCCGGTGTTTGACCAGATTTTGGAAGGGACCAAATGGAGCACCGTCAACACGTCGGAGGATTACGCCAAGGGGCTGTCGTCGTATTACGAGGTTGTGGCGGTGGCGATGGGGAAGATGATGAGCGTTTGCTTGGCCAGGAATCAGCATACGGATTCCAGCTCCAGCCCTTTCATTTCGGCTCTCGAATTGGAGTTTTTGGATGACTCTGTTTATAACACCACGGATTTCAAGAACTATGCTCTGAGTATGGTTACAAGGAGCAGCTTTGGACATGATTTTGAAATCATTGGCTTCCCAGATGATGCATTCAACCGGCTATGGCACCCATTTATTGATGAGAACCCATTGGTAACATGCCGTTCCAATATTACTTCTTCAAACTTTTGGAATCTCCCGCCACCGAGGGCTTTTAACACCGCCATGACAACCAGCCGCGGGAAGTCGCTGAAAATCAACTGGCCTCCATTCCCACTTCCAGCAGCCTACTACTACATCTCGCTATACTTTCAGGACAATCGGTCTCCGAGTCCGTTTAGCTGGAGGGTCTTTAGTGTTGCAGTAAATGGCAAGAATTTCTTTGCAAACCTCAATGCCACTGCTAATGGTGTGACTGTTTACAGTGCGAATTGGCCTTTATCTGGACAGACCGTCATAGAACTAACTCCTGCAGATGACATGCCTGTTGGGCCTGTGATTAATGCTGCTGAGATCCTTCAGCTTTTTCCTCTCGGTGGAAGGACATTAACTAGAGATGTGATGGTAATGGAGGACTTGGCAAGAAGCTTCAATAACCCACCCCCTGATTGGACTGGCGATCCTTGCTTGCCTAAGGATAATTCGTGGACTGGAGTTACCTGTTCCGATGGAAAACTTGCTCGAGTTACCAGTTTGAACTTGACAAATTTTGGGTTATCTGGGACACTTCCTGCAAGCATAAACAATTTAACTGCCCTCTCTCATCTTTGGCTCGGTAGCAACAAACTCTCAGGCTCTATTCCAGAAATGGGTTCACTGAAGGAGTTGCAAACTTTGCATCTGGAAAAGAACCAATTTGATGGGTCAATTCCTTTTTCACTCTCCATGCTTCCGCATATTCATGAAATATTTCTCCAAAATAATGAACTGAAGACGAAAACTCTCGAAGCACTGCTGAAGCGAGGCATACACGTCGAGTAA 1539 48.02 MKKYKMSLLNSIFFFFFLLLLRFSSASPPSPRGYLLNCGATELDAKVTIGSLQYITDEGFTSVGNITKLPDPNLVPILSSLRYFPDKSARKYCYAIPVVKGGKYLVRTTYYYGGYDGGKEPPVFDQILEGTKWSTVNTSEDYAKGLSSYYEVVAVAMGKMMSVCLARNQHTDSSSSPFISALELEFLDDSVYNTTDFKNYALSMVTRSSFGHDFEIIGFPDDAFNRLWHPFIDENPLVTCRSNITSSNFWNLPPPRAFNTAMTTSRGKSLKINWPPFPLPAAYYYISLYFQDNRSPSPFSWRVFSVAVNGKNFFANLNATANGVTVYSANWPLSGQTVIELTPADDMPVGPVINAAEILQLFPLGGRTLTRDVMVMEDLARSFNNPPPDWTGDPCLPKDNSWTGVTCSDGKLARVTSLNLTNFGLSGTLPASINNLTALSHLWLGSNKLSGSIPEMGSLKELQTLHLEKNQFDGSIPFSLSMLPHIHEIFLQNNELKTKTLEALLKRGIHVE 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5900123 5903535 - Hsped.02g05820.1 Hepe02g0582 562083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0582 512 PANTHER OS07G0107800 PROTEIN-RELATED 35 481 - -
Hepe02g0582 512 Pfam Malectin-like domain 36 360 IPR024788 -
Hepe02g0582 512 SUPERFAMILY L domain-like 377 502 - -
Hepe02g0582 512 Gene3D Ribonuclease Inhibitor 372 506 IPR032675 -
Hepe02g0582 512 Gene3D - 204 361 - -
Hepe02g0582 512 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 408 500 - -
Hepe02g0582 512 Pfam Leucine Rich Repeat 462 481 IPR001611 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0582 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0582 Hepe-Chr2:5900123 Hepe03g0179 Hepe-Chr3:2240594 6.83e-140 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g421 . . . . . . . . Cmo19g00625 . . . . . Sed05g2434 . Cpe15g00491 Bhi05g01125 Tan02g0904 Cmetu01g2340 . Hepe02g0582 . . Cla02g00596 Cam02g0625 Cec02g0625 Cco02g0640 Clacu02g0629 Cmu02g0625 Cre02g0949 Cone12ag1096 . . . . Csa07g00765 . Cme01g00044 Blo04g00489 . . Bda14g00519 . . Bma03g00519 . . . . . Cma19g00607 . Car19g00461 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009605 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 3 1 33