Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0588 ATGGGTATCTTTTCAAAGCAAAAATTATGGAGAAATGGAACGACCCATGATGATTCGATGGGTTTTAATGGGGTTTCTGCAGCGAGCAAGAGGAAATGGACCCGTTTCATGCCTCTGTTTGTGGCGATTGTGGTCATAGCAGAGATCGCATCTCTGAGTCGGCTCGACATGTCGAAAAATGCAGCTATGGTGGATTCTTGGGTCGACTTGTTCTATGGATCGCCGCTTTTGCAAGAAGGGACTGAAGATGTTAGTAACATGGGCAGTGGAATTTCCATTGATGATGGAGTAATTGGTTCAGGTGGCTGTGAGGAGTGGCTGGAGAAGGAGGATGCTGTGGAGTATTCTAGGGACTTCAAAAGGGAACCTGTTTTGGTTTCTGGTTCTGAGAAGGAGTGGAGAACTTGTGATGTGGGATGCCAGTTTGGATTTAATCCTGGTCAGCAACCTGATGCCGCATTGGGATCACGATCACCTCAACAAGGTAGAGTTGCTAGCGTTCTTCGATCAATGGAATCATCGCATTACTATCCAGAGAATAATATTGCTATGGCGAGACGGAAGGGTTACACCGTGATTATGACCACTAGTCTATCATCAGATGTTCCTGTTGGATATTTTTCCTGGGCTGAATACGACATAATGGCACCAGTGCAGCCAAAGACTGAGCCTGCCCTTGCAGCTGCCTTCATTTCGAATTGTGGTGCCCGCAACTTCCGCTTGCAAGCTCTTGATGCACTTGAGAAGTTGAATGTCAAAATTGATTCATATGGTGGTTGCCACAGGAACCGCGATGGAAGAGTTGACAAAGTGGAAACTTTGAAGCGCTATAAGTTCAGCCTGGCTTTTGAGAATTCCAATGAGGAAGATTATGTCACTGAAAAGTTTTTCCAATCTCTTGTTGCAGGAACTATTCCTGTGGTGGTTGGCACTCCAAATATCGAGGAGTTCGCTCCTTCTTCCGATTCTTTTTTGCATATCAAGGAGATTTCCGATGTTGAGTCGATTGCCAAGTCCATGAAATACCTTGCTGAAAATCCCAAAATGTACAATCAATCACTAAGATGGAAGTACGACGGTCCATCTGATTCTTTCAAGGCCCTTGTAGATATGGCAGCAGTACACTCATCATGCCGCCTTTGCATCCACTTGGCAACCATCATCCACGAGAAAGAAGAAAACAGTCCCGAGTTCAAGAAACGACCGTGCAAGTGCTCTCGAGGCTCTGAAACCGTGTATCATTTATACGTAAGGGAGAGAGGGAGGTTTGAAATGCAGTCCATTTTCTTGAGGTCAGGGAATTTGACATTGGAGGCTTTAGAATCAGCAGTACTCGAAAAGTTCAATTCTTTGAAACACGTAGCGATTTGGAAGCAAGAACGGCCCGAAAGCATAAGAGGAGGAGATGAACTAAAAATATACAGAATGTATCCTGTTGGGTTGAGTCAGAGGCAGGCTTTATATAGCTTCAAATTCAAAGGTAATGATGATTTCAGAACTCACATAGAAACACACCCTTGTGCAAAGATGGAGATCATATTTGTCTGA 1548 44.44 MGIFSKQKLWRNGTTHDDSMGFNGVSAASKRKWTRFMPLFVAIVVIAEIASLSRLDMSKNAAMVDSWVDLFYGSPLLQEGTEDVSNMGSGISIDDGVIGSGGCEEWLEKEDAVEYSRDFKREPVLVSGSEKEWRTCDVGCQFGFNPGQQPDAALGSRSPQQGRVASVLRSMESSHYYPENNIAMARRKGYTVIMTTSLSSDVPVGYFSWAEYDIMAPVQPKTEPALAAAFISNCGARNFRLQALDALEKLNVKIDSYGGCHRNRDGRVDKVETLKRYKFSLAFENSNEEDYVTEKFFQSLVAGTIPVVVGTPNIEEFAPSSDSFLHIKEISDVESIAKSMKYLAENPKMYNQSLRWKYDGPSDSFKALVDMAAVHSSCRLCIHLATIIHEKEENSPEFKKRPCKCSRGSETVYHLYVRERGRFEMQSIFLRSGNLTLEALESAVLEKFNSLKHVAIWKQERPESIRGGDELKIYRMYPVGLSQRQALYSFKFKGNDDFRTHIETHPCAKMEIIFV 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5996023 6002348 - Hsped.02g05880.1 Hepe02g0588 562089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0588 515 Gene3D - 170 363 IPR038577 -
Hepe02g0588 515 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 225 387 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Hepe02g0588 515 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 128 391 - -
Hepe02g0588 515 FunFam Glycoprotein 3-alpha-L-fucosyltransferase A 172 364 - -
Hepe02g0588 515 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 64 487 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0588 K00753 - - csv:101205170 943.34
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0588 Hepe-Chr2:5996023 Hepe07g0463 Hepe-Chr7:4779476 3.98e-261 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe10g1764 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.4 3.8e-154 542.0
Hepe07g2497 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 3.5e-152 535.4
Hepe07g2497 . 114 582 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 9.2e-166 580.5
Hepe10g1764 . 84 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 3.6e-162 568.5
Hepe10g1764 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 52.4 5.0e-134 474.9
Hepe07g2497 . 111 584 Xyloglucan Fucosyltransferase1 AT1G14110 51.8 6.5e-134 474.6
Hepe02g0588 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 64.6 7.2e-195 677.2
Hepe07g0463 . 2 514 Xyloglucan Fucosyltransferase1 AT1G49710 63.2 1.8e-185 646.0
Hepe02g2840 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 70.8 1.8e-169 592.4
Hepe10g1764 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.2 1.7e-176 616.3
Hepe07g2497 . 8 583 Xyloglucan Fucosyltransferase1 AT2G03210 51.8 1.8e-170 596.3
Hepe07g0902 . 53 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.8 7.8e-142 501.1
Hepe10g1764 . 43 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.7 2.7e-195 678.7
Hepe07g2497 . 114 580 Xyloglucan Fucosyltransferase1 AT2G03220 64.9 1.0e-186 650.2
Hepe07g0902 . 50 544 Xyloglucan Fucosyltransferase1 AT2G03220 52.9 1.9e-153 539.7
Hepe10g1764 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.3 1.7e-151 533.1
Hepe07g2497 . 94 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.9 2.1e-146 516.2
Hepe10g1764 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 4.1e-145 511.9
Hepe07g2497 . 105 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.7 8.1e-141 497.7
Hepe10g1764 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.3 1.8e-148 523.1
Hepe07g2497 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.9e-142 503.1
Hepe02g0588 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.0 8.9e-190 660.2
Hepe07g0463 . 2 514 Xyloglucan Fucosyltransferase1 AT3G19280 64.7 3.5e-186 648.3
Hepe10g1764 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.2 1.7e-176 616.3
Hepe07g2497 . 8 583 Xyloglucan Fucosyltransferase1 AT2G03210 51.8 1.8e-170 596.3
Hepe07g0902 . 53 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.8 7.8e-142 501.1
Hepe10g1764 . 43 566 Xyloglucan Fucosyltransferase1 AT2G03220 62.7 2.7e-195 678.7
Hepe07g2497 . 114 580 Xyloglucan Fucosyltransferase1 AT2G03220 64.9 1.0e-186 650.2
Hepe07g0902 . 50 544 Xyloglucan Fucosyltransferase1 AT2G03220 52.9 1.9e-153 539.7
Hepe10g1764 . 6 566 Xyloglucan Fucosyltransferase1 AT2G03210 54.2 1.7e-176 616.3
Hepe07g2497 . 8 583 Xyloglucan Fucosyltransferase1 AT2G03210 51.8 1.8e-170 596.3
Hepe07g0902 . 53 545 Xyloglucan Fucosyltransferase1 AT2G03210 50.8 7.8e-142 501.1
Hepe10g1764 . 92 565 Xyloglucan Fucosyltransferase1 AT2G15390 54.3 1.8e-148 523.1
Hepe07g2497 . 114 582 Xyloglucan Fucosyltransferase1 AT2G15390 51.9 1.9e-142 503.1
Hepe10g1764 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 4.1e-145 511.9
Hepe07g2497 . 105 583 Xyloglucan Fucosyltransferase1 AT2G15370 50.7 8.1e-141 497.7
Hepe10g1764 . 100 565 Xyloglucan Fucosyltransferase1 AT1G14080 56.4 3.8e-154 542.0
Hepe07g2497 . 112 582 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 3.5e-152 535.4
Hepe07g2497 . 114 582 Xyloglucan Fucosyltransferase1 AT1G14100 58.9 9.2e-166 580.5
Hepe10g1764 . 84 566 Xyloglucan Fucosyltransferase1 AT1G14100 57.6 3.6e-162 568.5
Hepe10g1764 . 101 570 Xyloglucan Fucosyltransferase1 AT1G14110 52.4 5.0e-134 474.9
Hepe07g2497 . 111 584 Xyloglucan Fucosyltransferase1 AT1G14110 51.8 6.5e-134 474.6
Hepe10g1764 . 101 565 Xyloglucan Fucosyltransferase1 AT2G15350 54.3 1.7e-151 533.1
Hepe07g2497 . 94 583 Xyloglucan Fucosyltransferase1 AT2G15350 50.9 2.1e-146 516.2
Hepe02g0588 . 1 515 Xyloglucan Fucosyltransferase1 AT3G19280 64.0 8.9e-190 660.2
Hepe07g0463 . 2 514 Xyloglucan Fucosyltransferase1 AT3G19280 64.7 3.5e-186 648.3
Hepe02g0588 . 1 515 Xyloglucan Fucosyltransferase1 AT1G49710 64.6 7.2e-195 677.2
Hepe07g0463 . 2 514 Xyloglucan Fucosyltransferase1 AT1G49710 63.2 1.8e-185 646.0
Hepe02g2840 . 7 406 Xyloglucan Fucosyltransferase1 AT1G71990 70.8 1.8e-169 592.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001699 7 4 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 4 1 70