Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0597 ATGGCTCAGGTTCAACCTCAACCTCAACCTCAACCTCAAGTTGCCATCTCCGGCGTCGATCCGGCGGCCAATGGTGGTGCCAATCAGCATGTCACGACGTCGTTGTATGTTGGAGATCTTGATGTGAACGTCACCGATTCCCAGCTTTATGATCTTTTTAATCAGGTGGGGCAGGTGGTTTCTGTTAGGGTTTGCAGGGATTTGTCGACCCGTCGATCGCTTGGTTATGGCTATGTCAATTACAGCAGCCCAGTTGATGCTTCAAGGGCATTAGATGTGCTGAACTTCACCCCCTTGAATGGGAATCCTATTCGAGTAATGTACTCTCATCGTGACCCTAGCATGCGGAAAAGTGGATCTGGTAATATTTTTATCAAGAATCTGGACAAGGCAATTGATCACAAAGCTTTGCACGATACATTTTCTGCATTTGGAAGCATTCTATCCTGCAAGGTTGCTACAGATCCATCTGGCCAGTCTAAAGGCTTTGGTTTTGTGCAATTTGACACTGAGGAATCTGCCTTAAAAGCTATAGATAAGTTGAATGGTATGCTTCTGAACGATAAGCAGGTGTTTGTGGGACCTTTCCTTCGCAAGCAAGAAAGAGAAAATGTCAGTGAGAAAACAAGATTTAACAATGTTTTTGTCAAGAATCTGGCAGAAACTACGTCTGAAGAAGAATTGCAGAATATGTTTGGGGAGTTTGGACCAATCACCAGTGTTGTGGTGATGAGGGATGGGGATGGAAAATCCAGATGCTTTGGCTTTGTGAACTTTGAGAATACAGATGATGCTGCTAGGTCTGTTGATGCACTTAATGGAAAGAAGCTTGATGGGAAAGAGTTGTATGTAGGAAAAGCCCAGAAGAAATCTGAAAGGGAAGTAGAATTGAAAAGTCGATTTGAACAGAGTGTAAAAGAAGCTGCTGATAAGTATCAAGGTGCAAACTTATATGTTAAGAATTTAGATGACACCATTGATGATGATAAACTGAAGGACTTATTCGCTGCGTTTGGAACCATTACCTCATGCAAGGTTATGCGAGACCCCAATGGAATTAGTAGAGGGTCTGGGTTTGTTGCATTCTCAACTCCTGAAGAGGCTGCAAGAGCTCTTGCAGAGATGAATGGAAGAATGATTGCGAGCAAGCCACTTTATGTTGCACTTGCACAGAGGAAGGAAGATAGAAGAGCTAGGTTGCAGGCACAGTTTTCCCAAATGCAGCCAATGGCAATGGCATCTTCAGTTGCTCCTCGTGGCATGCCCATGTATCCTCCAGGTGGTCCAGGTATCGGACAACAAATATTCTATGGTCAAGCTCCACCTACTATTATTTCCTCACAGCCTGGCTTTGGTTATCAACAGCAACTAATGCCTGGAATGAGGCCTGGTGGAGGTCCCATGCCAAATTTTTTTGTACCAATGGTTCAGCAGGGCCAGCAAGGGCAAAGATCTGGTGGCAGGCGTGCCGGTGCCATTCAGCAAAACCAGCAGCCTGTTCCAATGATGCAGCAGCAGATGCTACCAAGAGGACGTGTCTACCGTTACCCTCCTGGACGTGGAATGCCTGATCTTCCCATGCCCGGTGTTGCCGGTGGTATGTTCTCTGTTCCATATGAGATGGGTGGTATGCCGCCACGTGATGCTGTCCACCCTCAACCAATTCCTGTTGGTGCTTTGGCTTCTGCCCTTGCAAATGCAACTTCAGACCAGCAAAGAACGATGCTGGGGGAAAATCTTTATCCACTTGTGGAACAGCTAGAGCCTGATAATGCTGCCAAGGTAACAGGCATGCTATTGGAAATGGACCAAACTGAGGTTCTCCACCTGCTCGAGTCCCCCGACGCTCTGAAAGCCAAGGTGGCCGAGGCTATTGAGGTTTTAAGAAGTGTCGCTCAGCAGTCGGGCAATGCAGCTGATCAATTGGCTTCACTATCCCTGAATGACAACCTTGATTCCTAA 1962 46.48 MAQVQPQPQPQPQVAISGVDPAANGGANQHVTTSLYVGDLDVNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSSPVDASRALDVLNFTPLNGNPIRVMYSHRDPSMRKSGSGNIFIKNLDKAIDHKALHDTFSAFGSILSCKVATDPSGQSKGFGFVQFDTEESALKAIDKLNGMLLNDKQVFVGPFLRKQERENVSEKTRFNNVFVKNLAETTSEEELQNMFGEFGPITSVVVMRDGDGKSRCFGFVNFENTDDAARSVDALNGKKLDGKELYVGKAQKKSEREVELKSRFEQSVKEAADKYQGANLYVKNLDDTIDDDKLKDLFAAFGTITSCKVMRDPNGISRGSGFVAFSTPEEAARALAEMNGRMIASKPLYVALAQRKEDRRARLQAQFSQMQPMAMASSVAPRGMPMYPPGGPGIGQQIFYGQAPPTIISSQPGFGYQQQLMPGMRPGGGPMPNFFVPMVQQGQQGQRSGGRRAGAIQQNQQPVPMMQQQMLPRGRVYRYPPGRGMPDLPMPGVAGGMFSVPYEMGGMPPRDAVHPQPIPVGALASALANATSDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAIEVLRSVAQQSGNAADQLASLSLNDNLDS 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6124328 6128518 - Hsped.02g05970.1 Hepe02g0597 562098
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0597 653 Gene3D - 1 122 IPR012677 -
Hepe02g0597 653 Gene3D - 197 296 IPR012677 -
Hepe02g0597 653 Gene3D - 297 405 IPR012677 -
Hepe02g0597 653 CDD RRM2_I_PABPs 119 195 IPR045305 -
Hepe02g0597 653 SMART poly_2 568 631 IPR002004 GO:0003723(InterPro)
Hepe02g0597 653 CDD RRM4_I_PABPs 314 392 - -
Hepe02g0597 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 315 392 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 34 629 IPR006515 GO:0003723(InterPro)
Hepe02g0597 653 Pfam RNA recognition motif 35 105 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 Pfam RNA recognition motif 214 282 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 Pfam RNA recognition motif 317 385 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 Pfam RNA recognition motif 123 190 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 Gene3D - 123 194 IPR012677 -
Hepe02g0597 653 FunFam Polyadenylate-binding protein 552 634 - -
Hepe02g0597 653 SUPERFAMILY RNA-binding domain, RBD 33 202 IPR035979 GO:0003676(InterPro)
Hepe02g0597 653 FunFam Polyadenylate-binding protein 20 118 - -
Hepe02g0597 653 FunFam Polyadenylate-binding protein 203 297 - -
Hepe02g0597 653 Gene3D - 551 635 - -
Hepe02g0597 653 SMART rrm1_1 122 194 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 SMART rrm1_1 316 388 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 SMART rrm1_1 34 107 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 SMART rrm1_1 213 285 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 SUPERFAMILY RNA-binding domain, RBD 212 395 IPR035979 GO:0003676(InterPro)
Hepe02g0597 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 121 193 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 Pfam Poly-adenylate binding protein, unique domain 563 628 IPR002004 GO:0003723(InterPro)
Hepe02g0597 653 FunFam Polyadenylate-binding protein 298 403 - -
Hepe02g0597 653 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 289 IPR000504 GO:0003723(InterPro)
Hepe02g0597 653 CDD RRM3_I_PABPs 211 290 - -
Hepe02g0597 653 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 556 633 IPR002004 GO:0003723(InterPro)
Hepe02g0597 653 MobiDBLite consensus disorder prediction 1 22 - -
Hepe02g0597 653 PANTHER RNA BINDING PROTEIN 26 213 - GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER)
Hepe02g0597 653 FunFam Polyadenylate-binding protein 119 202 - -
Hepe02g0597 653 SUPERFAMILY PABC (PABP) domain 497 643 IPR036053 GO:0003723(InterPro)
Hepe02g0597 653 CDD RRM1_I_PABPs 34 113 IPR034364 -
Hepe02g0597 653 SMART rrm2_1 213 285 IPR003954 GO:0003676(InterPro)
Hepe02g0597 653 SMART rrm2_1 34 107 IPR003954 GO:0003676(InterPro)
Hepe02g0597 653 SMART rrm2_1 316 388 IPR003954 GO:0003676(InterPro)
Hepe02g0597 653 SMART rrm2_1 122 194 IPR003954 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0597 Hepe-Chr2:6124328 Hepe02g2823 Hepe-Chr2:77316626 1.38e-224 dispersed
Hepe05g0317 Hepe-Chr5:3919342 Hepe02g0597 Hepe-Chr2:6124328 1.52e-149 transposed
Hepe05g1305 Hepe-Chr5:61158519 Hepe02g0597 Hepe-Chr2:6124328 2.20e-31 transposed
Hepe05g2065 Hepe-Chr5:71135404 Hepe02g0597 Hepe-Chr2:6124328 9.82e-15 transposed
Hepe07g0784 Hepe-Chr7:9548455 Hepe02g0597 Hepe-Chr2:6124328 2.13e-13 transposed
Hepe02g0597 Hepe-Chr2:6124328 Hepe07g0453 Hepe-Chr7:4693582 0.0 wgd
Hepe02g0597 Hepe-Chr2:6124328 Hepe08g1069 Hepe-Chr8:10395109 1.14e-16 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0597 K13126 - csv:101223017 1125.92