Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0602 ATGGATCCAAAACCTACTGATTCCCCAACACCACCCACTGTTAGTTCCTCGGAGACTAAACCTCCAGGAGTACAGCCTCAGGCTCCTGCTGCCTCTGGAATGGATAATGTGGCACGAGATGCACCATCTAAGTTATCTCCTAGTGGCATAACTTCATGGGCCAAAAACTTGAAGATTTCTCAACCACAGTCAGCTTCACAAGATGGCACGACTGAAAATGCTGGGAAGTCAGCTTTTGCACGTTTTACTAGTGGTTTAGGATTGAACTTATCTCCAAAATCTCCTGCACCTAATGATTCCCCAGATGGAACTTCTAAAATTGCCCAACCCAGTTTTGTGGGATCAATTACAAGAGGGTTGGTTGACTCTTCAAAGAGTGCTGTAAAGGCTGTACAAGTTAAAGCTCGTCATGTTGTCTCCCAAAATAAGCGAAGATACCAGGAAGGTGGATTTGATTTGGATATGACTTATATTACTGAAAATATCATTGCTATGGGTTTCCCTGCCGGTGACATGAGCTCAGGGTTTTTCGGATATGTTGAGGGTTTCTACAGGAACCACATGGAAGAAGTCATTAAATTCTTTGAATCACATCACAAGGGAAAATACAAAGTATATAATCTTTGTTCTGAGAGGCTATATGATGCGTCATTATTTGAAGGAAAGGTGGCTTGTTTTCCTTTTGATGACCATAACTGTCCCCCGGTTCAACTGATAATATCATTTTGCCAAAGTGCTTATTCATGGCTGAAGGATGATATTGAAAATGTAGTGGTTGTGCATTGCAAGGCAGGAATGGCCAGGACAGGCTTGATGATTTCCAGTCTTCTTCTATATTTAAAGTTCTTTCCAACTGCTGAAGAATCCATTGAATACTACAATCTAAGAAGGTGTTTTGATGGCAAAGGCCTGGTTTTACCAAGTCAAATTAGGTATGTCAAGTATTTTGAACGTATTTTAACATACTTCAATGGAGAAAATCCTCCTGGCCGCAGGTGCGTGCTTAGAGGGTTTCGCCTCCACAGATGTCCATATTGGATCAGGCCTTCCATTACTGTATCTAACCATAATGGTGTTTTGTTCTCCACTAAAACGCATTCAAGAACCAAGAATCTCTCGGCAGAAGATTTTTGGTTTACTGCACCAAAGAAGGGGATAATGGTCTTTGCTTTGCCCGGGGAGCCTGGTCTAGCTGAGTTGTGTGGAGACTTCAAGGTTCATTTCCACGACCGCCAAGGAGATTTCTATTGTTGGCTAAACACAACCATGACTGAAAATCGGAAAATGCTCTACACTAATGATCTTGATGGGTTCGACAAGAGGAAACTGCCTTCCCCTGGATTTCAGGTGGAGGTTGTTCTAGTAGATACGTCGCCCAACGGGGACAATACTACCAAGAAGTCGGATGAAAGCTCAGGCTCGAAACCTTCTGCAGTTGATGCAGTTGATGGGAGTGAAGTTTCTGAGAACCAAAACAGAAAGTCAGGAACTAGTGATAAATATGATATATTATTTTCTGATAGTGAATCAGAAGGTGGTTCTTCAAAGAGCAAGAAGGAGGCAGCTGAAGGTTTAGAGGCCGAAGAATCAGCTGTCAAGACGACATCTAAATCTCTAACGAGTGCGACTTCAGCAGACAATGTTGCAAGTTTATCACACGCAACAAAGCAAGTTTCCCTTGGAGATGGTGGAGCTAAGCAGACTGCTCCTGCTAGCGACAGAAAAGGTGATGGAGTCAAAAGATCTGATTCTCTCCCAGAACTTCCAAACTCAGAAAGTGAATTCAAGGCCATGGCTGCTGATGCTTCTGTTTTCACATTTGGCGACGACGAAGACTATGAGAGTGAGTAA 1851 42.9 MDPKPTDSPTPPTVSSSETKPPGVQPQAPAASGMDNVARDAPSKLSPSGITSWAKNLKISQPQSASQDGTTENAGKSAFARFTSGLGLNLSPKSPAPNDSPDGTSKIAQPSFVGSITRGLVDSSKSAVKAVQVKARHVVSQNKRRYQEGGFDLDMTYITENIIAMGFPAGDMSSGFFGYVEGFYRNHMEEVIKFFESHHKGKYKVYNLCSERLYDASLFEGKVACFPFDDHNCPPVQLIISFCQSAYSWLKDDIENVVVVHCKAGMARTGLMISSLLLYLKFFPTAEESIEYYNLRRCFDGKGLVLPSQIRYVKYFERILTYFNGENPPGRRCVLRGFRLHRCPYWIRPSITVSNHNGVLFSTKTHSRTKNLSAEDFWFTAPKKGIMVFALPGEPGLAELCGDFKVHFHDRQGDFYCWLNTTMTENRKMLYTNDLDGFDKRKLPSPGFQVEVVLVDTSPNGDNTTKKSDESSGSKPSAVDAVDGSEVSENQNRKSGTSDKYDILFSDSESEGGSSKSKKEAAEGLEAEESAVKTTSKSLTSATSADNVASLSHATKQVSLGDGGAKQTAPASDRKGDGVKRSDSLPELPNSESEFKAMAADASVFTFGDDEDYESE 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 6253950 6259192 + Hsped.02g06020.1 Hepe02g0602 562103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0602 616 MobiDBLite consensus disorder prediction 86 109 - -
Hepe02g0602 616 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 399 454 IPR035892 -
Hepe02g0602 616 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 258 297 IPR000387 GO:0016311(InterPro)
Hepe02g0602 616 MobiDBLite consensus disorder prediction 87 109 - -
Hepe02g0602 616 MobiDBLite consensus disorder prediction 531 557 - -
Hepe02g0602 616 MobiDBLite consensus disorder prediction 456 475 - -
Hepe02g0602 616 ProSiteProfiles Phosphatase tensin-type domain profile. 144 323 IPR029023 -
Hepe02g0602 616 MobiDBLite consensus disorder prediction 1 74 - -
Hepe02g0602 616 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 225 278 - -
Hepe02g0602 616 Pfam PTEN2, C2 domain 330 457 - -
Hepe02g0602 616 SMART PTEN_C2_2 328 456 IPR014020 -
Hepe02g0602 616 ProSitePatterns Tyrosine specific protein phosphatases active site. 260 270 IPR016130 GO:0016311(InterPro)
Hepe02g0602 616 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 157 324 IPR029021 -
Hepe02g0602 616 MobiDBLite consensus disorder prediction 512 527 - -
Hepe02g0602 616 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 131 557 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Hepe02g0602 616 ProSiteProfiles C2 tensin-type domain profile. 330 457 IPR014020 -
Hepe02g0602 616 MobiDBLite consensus disorder prediction 484 511 - -
Hepe02g0602 616 MobiDBLite consensus disorder prediction 455 596 - -
Hepe02g0602 616 CDD PTP_PTEN 154 319 IPR045101 GO:0016791(InterPro)
Hepe02g0602 616 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 129 326 - -
Hepe02g0602 616 Gene3D Protein tyrosine phosphatase superfamily 129 326 IPR029021 -
Hepe02g0602 616 Gene3D - 333 458 - -
Hepe02g0602 616 MobiDBLite consensus disorder prediction 45 74 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0602 K01110 - - csv:101222304 1086.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2078 Hepe-Chr2:51911721 Hepe02g0602 Hepe-Chr2:6253950 1.14e-45 transposed
Hepe02g0602 Hepe-Chr2:6253950 Hepe04g1268 Hepe-Chr4:68209864 6.85e-240 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe01g0559 . 79 386 Protein tyrosine phosphatase (PTP) family AT1G71860 66.5 6.6e-120 427.6
Hepe09g0013 . 1 864 Protein tyrosine phosphatase (PTP) family AT5G23720 62.8 5.1e-300 1027.3
Hepe03g0164 . 97 236 Protein tyrosine phosphatase (PTP) family AT3G06110 51.1 1.2e-37 153.3
Hepe02g0068 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 76.9 3.0e-71 265.0
Hepe01g1069 . 92 372 Protein tyrosine phosphatase (PTP) family AT3G52180 68.3 1.1e-112 403.3
Hepe01g0659 . 4 278 Protein tyrosine phosphatase (PTP) family AT3G10940 65.8 5.3e-107 384.4
Hepe02g1823 . 14 462 Protein tyrosine phosphatase (PTP) family AT3G01510 73.7 1.9e-204 708.8
Hepe08g0587 . 10 210 Protein tyrosine phosphatase (PTP) family AT2G32960 59.7 7.0e-74 274.2
Hepe02g0073 . 6 233 Protein tyrosine phosphatase (PTP) family AT2G32960 59.6 3.0e-72 268.9
Hepe09g1309 . 14 170 Protein tyrosine phosphatase (PTP) family AT2G32960 50.8 4.4e-52 201.8
Hepe06g1113 . 1 333 Protein tyrosine phosphatase (PTP) family AT2G35680 56.3 6.1e-102 367.9
Hepe08g2635 . 10 229 Protein tyrosine phosphatase (PTP) family AT2G35680 60.1 1.9e-79 293.1
Hepe08g2635 . 27 216 Protein tyrosine phosphatase (PTP) family AT5G56610 51.0 7.7e-46 180.6
Hepe08g0587 . 43 211 Protein tyrosine phosphatase (PTP) family AT4G03960 76.9 3.4e-76 281.6
Hepe02g0073 . 36 234 Protein tyrosine phosphatase (PTP) family AT4G03960 63.3 1.1e-69 260.0
Hepe09g1309 . 12 170 Protein tyrosine phosphatase (PTP) family AT4G03960 59.7 6.7e-56 214.2
Hepe09g1309 . 1 196 Protein tyrosine phosphatase (PTP) family AT3G02800 69.0 7.5e-79 290.4
Hepe08g0587 . 40 206 Protein tyrosine phosphatase (PTP) family AT3G02800 59.9 7.5e-55 210.7
Hepe01g0838 . 1 184 Protein tyrosine phosphatase (PTP) family AT3G55270 66.0 2.2e-62 237.7
Hepe02g2078 . 1 415 Protein tyrosine phosphatase (PTP) family AT5G39400 64.2 1.3e-151 533.1
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G19420 63.4 1.4e-216 749.6
Hepe04g1268 . 31 601 Protein tyrosine phosphatase (PTP) family AT3G19420 61.7 5.7e-199 691.0
Hepe04g1268 . 33 601 Protein tyrosine phosphatase (PTP) family AT3G50110 61.6 1.7e-190 662.9
Hepe02g0602 . 6 616 Protein tyrosine phosphatase (PTP) family AT3G50110 55.2 1.5e-178 623.2
Hepe09g0582 . 1 1206 Protein tyrosine phosphatase (PTP) family AT5G58160 54.1 5.5e-313 1070.8
Hepe08g1059 . 56 321 Protein tyrosine phosphatase (PTP) family AT5G58160 64.6 1.9e-92 338.2
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT3G10550 67.5 0.0e+00 1165.6
Hepe02g2902 . 1 862 Protein tyrosine phosphatase (PTP) family AT5G04540 65.8 0.0e+00 1112.8
Hepe08g0239 . 62 244 Protein tyrosine phosphatase (PTP) family AT3G44620 65.2 1.7e-67 253.1
Hepe06g1037 . 23 319 Protein tyrosine phosphatase (PTP) family AT2G35320 61.3 2.3e-108 389.0
Hepe04g0778 . 1 672 Protein tyrosine phosphatase (PTP) family AT3G09100 69.0 6.1e-279 956.8
Hepe04g0778 . 5 672 Protein tyrosine phosphatase (PTP) family AT5G01290 65.8 1.1e-253 872.8
Hepe04g0778 . 86 672 Protein tyrosine phosphatase (PTP) family AT5G28210 55.5 1.4e-181 633.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001006 4 2 3 3 2 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 2 2 2 2 11 6 2 83