Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0667 ATGGCAAGCAAAAGCAAGATCCTGATCGTTGGAGGGACTGGTTATATTGGAAAGTTCATTGCGGAGGCGAGTGCTAAGGCTGGGAATCCAACCTATGCTCTTGTTCGAGATGCCACTCTCTCTGATTCTGCCAAGGCTCCAATTATCAATAATTTCAAGAACTTGGGAGTCAACATAGTCTCTGCCATAAAAGATGTGGATGTTGTGATCTCCACCGTTGGTGCGGGTCAGCTAGCAGATCAAGAGAAGCTCATTGCTGCCATCAAAGAGGCTGGCAATGTTAAGATTGGGAAAACCCTCGAGAGAATCTATGTTCCAGAGGAACAAGTTTTGAAGAACATCCAAGAGGCTCCACTTCCAATGAACGTGATATTAGCAATTTCTCACTCAGCATTTGTGAAGGGAGATCATACCAACTTTGAAATTGAAGCTGCATTTGGAGTGGAAGCCACAAATTTGTATCCAGATGTTAAATATACAAGCGTAGATGAATATCTCAATCAATTTGTTTGA 513 42.69 MASKSKILIVGGTGYIGKFIAEASAKAGNPTYALVRDATLSDSAKAPIINNFKNLGVNIVSAIKDVDVVISTVGAGQLADQEKLIAAIKEAGNVKIGKTLERIYVPEEQVLKNIQEAPLPMNVILAISHSAFVKGDHTNFEIEAAFGVEATNLYPDVKYTSVDEYLNQFV 170
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7182551 7184890 - Hsped.02g06670.1 Hepe02g0667 562168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0667 170 Gene3D - 77 170 - -
Hepe02g0667 170 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 169 IPR036291 -
Hepe02g0667 170 PANTHER PINORESINOL REDUCTASE-RELATED 4 95 IPR050608 -
Hepe02g0667 170 Pfam NmrA-like family 7 95 IPR008030 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0667 K23050 - - csv:101212294 158.688
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0667 Hepe-Chr2:7182551 Hepe06g1280 Hepe-Chr6:62698366 1.83e-70 dispersed
Hepe02g0667 Hepe-Chr2:7182551 Hepe02g0490 Hepe-Chr2:4794399 4.87e-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g749 . . . . . . . . . . . . . . . . . Bhi05g01005 . . . Hepe02g0667 . . . . . . . . . . . . . Lsi10g00278 . . . . . . . . . . . . . . . . . . . . Bhi10g01657 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234