Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0676 ATGGAGACATCATCTATGGTGACTTTTTCTGAAATGGGAATGGATGATAGTGGCTTTGTCAATCAGTGGCACAAGAGCTCAATGGATGAGCTTGGCATGCTCCCATTAGCAGCAGCTTTTGGGGAGAATTTGCAGCATTCTTATGCTCAGACAAACCTTGACCAAAAGGCTTCTTCAAACCATTCTCACAATGCCATATTTGGGTATGTGAAACAGCCTAAAACTGATGGCTGGAGTTCATACCAAACAACTAATCATTTGCCAAACTCACAAGTCGTTGCCTATCCGACCGCATCTGTTTCGGCTTCAAACTATACAAACCAAATGGACTTCACGAGGCCAAAAGAGGAGGTTGTGTGTCCTCAGAGTATCGGCAATCTCCCTTCTGATATGTTGATCTCTCAGGGCTCATTACGCCACCAAAGCCATGTTACCAAATCCTACCGTGGAACGAAAAGAGCCGCTACAAACAGTCGATTCCCCCAAGCTCAAGATCACATTCTCGCAGAGCGGAAACGGCGAGAGAAGCTCAGCCAGCGGTTTATCGCTTTGTCTGCTATAGTTCCTGGCTTAAAGAAGATGGACAAGGCTTCAGTTCTTGGAGATGCCATCAAGTACCTGAAACAACTGCAAGAGAAAGTGAATACACTAGAGGAACAAACCCGAAGGAAAGACATTGAATCCGTGGTATTCATCAAGAAATCCCGAGTTTTTGCTGATGAAAACAACACATCAAAAGAGGAGGACGAGCCACTTCCCGAGATCGAAGCAAGATTTTGCGACAAAAATGTCCTTATAAGAATACACTGTGAGAAAAGGAAAGATGTCATAGAGAAGACAATTGCTGAAATTGAAAAGTTGCACCTTACAATAGTCAACAGCAGTGTTTTATCATTTGGGAATCTTGCTCTCGACATAACCATCATCGCTCAGATGGATAACGAATTCAGTTTGACGCTAAAGGACCTCGTGAAGAAGTTGCAGTCGACTTTTCGTTCGTTCCAATGA 1008 43.75 METSSMVTFSEMGMDDSGFVNQWHKSSMDELGMLPLAAAFGENLQHSYAQTNLDQKASSNHSHNAIFGYVKQPKTDGWSSYQTTNHLPNSQVVAYPTASVSASNYTNQMDFTRPKEEVVCPQSIGNLPSDMLISQGSLRHQSHVTKSYRGTKRAATNSRFPQAQDHILAERKRREKLSQRFIALSAIVPGLKKMDKASVLGDAIKYLKQLQEKVNTLEEQTRRKDIESVVFIKKSRVFADENNTSKEEDEPLPEIEARFCDKNVLIRIHCEKRKDVIEKTIAEIEKLHLTIVNSSVLSFGNLALDITIIAQMDNEFSLTLKDLVKKLQSTFRSFQ 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7449077 7452158 - Hsped.02g06760.1 Hepe02g0676 562177

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0676 335 Coils Coil 200 227 - -
Hepe02g0676 335 SMART finulus 167 216 IPR011598 GO:0046983(InterPro)
Hepe02g0676 335 Gene3D - 154 225 IPR036638 GO:0046983(InterPro)
Hepe02g0676 335 PANTHER BHLH TRANSCRIPTION FACTOR 11 332 IPR052610 -
Hepe02g0676 335 CDD bHLH_AtNAI1_like 163 235 - -
Hepe02g0676 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983(InterPro)
Hepe02g0676 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 223 IPR036638 GO:0046983(InterPro)
Hepe02g0676 335 Pfam Helix-loop-helix DNA-binding domain 165 211 IPR011598 GO:0046983(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0676 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0676 Hepe-Chr2:7449077 Hepe04g1365 Hepe-Chr4:69305147 6.61e-59 dispersed
Hepe02g0676 Hepe-Chr2:7449077 Hepe04g1364 Hepe-Chr4:69286540 2.54e-45 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g826 . . . . . . . . Cmo19g00526 Cmo11g01441 . . . . Sed10g1926 Cpe04g00344 Cpe15g00409 Bhi05g00987 Tan02g1087 Cmetu01g1268 Lac12g0126 Hepe02g0676 . . Cla02g00729 Cam02g0775 Cec02g0773 Cco02g0802 Clacu02g0770 Cmu02g0763 Cre02g1077 . Cone8ag1047 . . Lsi03g00644 Csa07g00647 . Cme01g00155 . . . . . . . . . . . . Cma19g00513 Car11g01157 Car19g00388 . . . . . . . . . . . . . . . . . . Chy01g00164 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000301 3 5 4 3 4 4 5 4 4 4 4 4 5 4 4 7 4 9 5 4 4 5 3 5 5 4 4 11 7 3 141
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54987 PF00010 HLH 4.10E-10 No_clan Hepe TF