Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0710 ATGTCGGACTCCAATTTTCAAGACGCGATGTACGATGCCGGAATCATGAACAACGATGGCCGGGATTTGGATGACATTCAGACCCGAGTTGGCGACGAAGATGACGACGTTGCCGGTGGGGAAGAGTCCATAGACAACCCTCAGATGCGCTTCGAAGACTCTGTGGGAATGAGCGGCTCGGTCTCGGCGATGGACCGAGTCCAGGATGTTGTTCCATCCACGTTTGTTTCCGGCTCCGATTACAACCCTTTGACTGGAAACGGTGGTGCTGATCAGCTTACGCTATCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCACCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAGGTGTTCCCGTCAACCAACAGGGTGCCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTCGGTTCAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGGTATAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAATTTATATCGTCTAAAGCTAATGGAGATGAAGTGGGCTCATCTTCAGTTTTGGCTCAAACGTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGTACGCATTGTGGAATCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGGTGGCCCAAGGACTCTGTGCAATGCATGTGGGCTGAAGTGGGCCAATAAGGTTTATTTATTAATCTAA 795 48.55 MSDSNFQDAMYDAGIMNNDGRDLDDIQTRVGDEDDDVAGGEESIDNPQMRFEDSVGMSGSVSAMDRVQDVVPSTFVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGGVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKANGDEVGSSSVLAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPGGPRTLCNACGLKWANKVYLLI 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7787619 7794189 - Hsped.02g07100.1 Hepe02g0710 562211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0710 264 Pfam tify domain 90 120 IPR010399 -
Hepe02g0710 264 Gene3D - 221 261 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe02g0710 264 Pfam GATA zinc finger 225 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0710 264 MobiDBLite consensus disorder prediction 18 34 - -
Hepe02g0710 264 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0710 264 PANTHER GATA TRANSCRIPTION FACTOR 28 39 260 IPR045280 GO:0006355(InterPro)
Hepe02g0710 264 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Hepe02g0710 264 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Hepe02g0710 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 259 - -
Hepe02g0710 264 CDD ZnF_GATA 224 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0710 264 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Hepe02g0710 264 SMART tify_2 86 121 IPR010399 -
Hepe02g0710 264 SMART GATA_3 219 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0710 264 MobiDBLite consensus disorder prediction 13 47 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0710 Hepe-Chr2:7787619 Hepe10g0438 Hepe-Chr10:4941738 4.30e-69 dispersed
Hepe02g0710 Hepe-Chr2:7787619 Hepe09g0101 Hepe-Chr9:825148 3.07e-07 transposed
Hepe02g0710 Hepe-Chr2:7787619 Hepe04g0907 Hepe-Chr4:63332278 4.85e-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54988 PF06203 CCT 9.50E-16 CL0281 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0710 - - - 0.0