Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0710 ATGTCGGACTCCAATTTTCAAGACGCGATGTACGATGCCGGAATCATGAACAACGATGGCCGGGATTTGGATGACATTCAGACCCGAGTTGGCGACGAAGATGACGACGTTGCCGGTGGGGAAGAGTCCATAGACAACCCTCAGATGCGCTTCGAAGACTCTGTGGGAATGAGCGGCTCGGTCTCGGCGATGGACCGAGTCCAGGATGTTGTTCCATCCACGTTTGTTTCCGGCTCCGATTACAACCCTTTGACTGGAAACGGTGGTGCTGATCAGCTTACGCTATCGTTCCGAGGGGAGGTTTACGCTTTTGACTCTGTATCACCGGACAAGGTGCAAGCCGTGCTTTTGCTTTTAGGTGGATATGAAATTCCTTCTGGTATTCCTGCTGTTGGAGGTGTTCCCGTCAACCAACAGGGTGCCGATGGCTTTCCTGTCAGGTCAGTTCAACCACAAAGAGCTGCTTCATTGAGTCGGTTCAGAGAGAAGAGAAAAGAAAGGTGTTTCGAGAAGAAAATTCGGTATAATGTGCGAAAAGAAGTTGCACTCAGAATGCAGCGGAAGAAGGGCCAATTTATATCGTCTAAAGCTAATGGAGATGAAGTGGGCTCATCTTCAGTTTTGGCTCAAACGTTGGATTCTGGTCAAGATGATGGCTTGTTGGAAACTTCATGTACGCATTGTGGAATCAGTTCAAAATCTACCCCAATGATGCGTCGAGGACCAGGTGGCCCAAGGACTCTGTGCAATGCATGTGGGCTGAAGTGGGCCAATAAGGTTTATTTATTAATCTAA 795 48.55 MSDSNFQDAMYDAGIMNNDGRDLDDIQTRVGDEDDDVAGGEESIDNPQMRFEDSVGMSGSVSAMDRVQDVVPSTFVSGSDYNPLTGNGGADQLTLSFRGEVYAFDSVSPDKVQAVLLLLGGYEIPSGIPAVGGVPVNQQGADGFPVRSVQPQRAASLSRFREKRKERCFEKKIRYNVRKEVALRMQRKKGQFISSKANGDEVGSSSVLAQTLDSGQDDGLLETSCTHCGISSKSTPMMRRGPGGPRTLCNACGLKWANKVYLLI 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 7787619 7794189 - Hsped.02g07100.1 Hepe02g0710 562211

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0710 264 Pfam tify domain 90 120 IPR010399 -
Hepe02g0710 264 Gene3D - 221 261 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Hepe02g0710 264 Pfam GATA zinc finger 225 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0710 264 MobiDBLite consensus disorder prediction 18 34 - -
Hepe02g0710 264 ProSitePatterns GATA-type zinc finger domain. 225 252 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0710 264 PANTHER GATA TRANSCRIPTION FACTOR 28 39 260 IPR045280 GO:0006355(InterPro)
Hepe02g0710 264 ProSiteProfiles CCT domain profile. 153 195 IPR010402 GO:0005515(InterPro)
Hepe02g0710 264 ProSiteProfiles Tify domain profile. 86 121 IPR010399 -
Hepe02g0710 264 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 222 259 - -
Hepe02g0710 264 CDD ZnF_GATA 224 259 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0710 264 Pfam CCT motif 153 195 IPR010402 GO:0005515(InterPro)
Hepe02g0710 264 SMART tify_2 86 121 IPR010399 -
Hepe02g0710 264 SMART GATA_3 219 264 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0710 264 MobiDBLite consensus disorder prediction 13 47 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0710 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0710 Hepe-Chr2:7787619 Hepe10g0438 Hepe-Chr10:4941738 4.30e-69 dispersed
Hepe02g0710 Hepe-Chr2:7787619 Hepe09g0101 Hepe-Chr9:825148 3.07e-07 transposed
Hepe02g0710 Hepe-Chr2:7787619 Hepe04g0907 Hepe-Chr4:63332278 4.85e-07 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe10g0438 . 47 298 Tify Gene Family AT4G24470 54.1 6.4e-69 258.1
Hepe02g0710 . 89 259 Tify Gene Family AT4G24470 59.0 8.4e-45 177.9
Hepe03g2127 . 73 273 Tify Gene Family AT4G24470 52.0 4.2e-44 175.6
Hepe03g2127 . 1 289 Tify Gene Family AT1G51600 58.2 5.7e-83 304.7
Hepe10g0439 . 71 246 Tify Gene Family AT1G51600 59.0 1.3e-50 197.2
Hepe10g0438 . 41 250 Tify Gene Family AT1G51600 54.2 8.3e-50 194.5
Hepe02g0710 . 86 259 Tify Gene Family AT1G51600 60.3 9.2e-49 191.0
Hepe03g2127 . 1 230 Tify Gene Family AT3G21175 56.9 2.7e-58 222.2
Hepe03g0226 . 1 180 Tify Gene Family AT4G14713 52.1 4.1e-46 181.8
Hepe03g0226 . 1 285 Tify Gene Family AT4G14720 52.0 2.1e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005475 1 2 2 2 1 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 1 1 4 1 0 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54988 PF06203 CCT 9.50E-16 CL0281 Hepe TF