Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0787 ATGGATCAATCAGAGCGTTCTCAGCATCAGCAACAATCACAGCAGACTGCAGGCCAAATACCATATTCTAATCCTTACCAAACAGCTCCGATGGTGGCTTCCGGAACTCCTTCTATTACGATTCCCCCGACTCAGCCACCATCCAGTTTCTCTAATTCTCCACACCAGCTTGCCTATCAGCAGGCACAGCATTTCCACCACCAGCAACAGCAGCAGCAGCAGCAACAGCTCCAAATGTTTTGGGCAAACCAAATTCAAGAGATTGAACAAACATCTGACTTCAAGAACCACAGTCTTCCCCTTGCTCGAATCAAGAAAATAATGAAAGCGGATGAAGACGTCCGAATGATTTCAGCTGAAGCACCAGTTATATTCGCAAAGGCGTGTGAAATGTTCATCTTGGAATTGACTCTGCGATCCTGGATTCATACAGAAGAGAACAAAAGGAGAACTTTACAGAAGAATGATATTGCAGCTGCAATTTCAAGGACCGATGTCTTCGATTTTTTGGTTGATATTATTCCTAGAGATGAACTGAAAGAGGAAGGTCTCGGAATCACGAAAGCTTCTATTCCCGTAGTTGGTTCCCCTGCTGATCTTCCTTATTACTATGTTCCATCGCAGCATCCGGTGGGTGCTACAGGGATGATTATGGGGAAGCAATTAGATCAAGCAAATATGTACGGTGCCACTGCTCAACAGCCCCGACCTCCGATGCCTTTCATGCCGTGGCCGCATACCCAACCTCAGCAGCAGCAACAAACTCAGCAGGAAAGTGACGGATAG 786 46.31 MDQSERSQHQQQSQQTAGQIPYSNPYQTAPMVASGTPSITIPPTQPPSSFSNSPHQLAYQQAQHFHHQQQQQQQQQLQMFWANQIQEIEQTSDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGITKASIPVVGSPADLPYYYVPSQHPVGATGMIMGKQLDQANMYGATAQQPRPPMPFMPWPHTQPQQQQQTQQESDG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 8894504 8895289 - Hsped.02g07870.1 Hepe02g0787 562288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0787 261 MobiDBLite consensus disorder prediction 246 261 - -
Hepe02g0787 261 Gene3D Histone, subunit A 59 176 IPR009072 GO:0046982(InterPro)
Hepe02g0787 261 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 78 208 IPR050568 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Hepe02g0787 261 MobiDBLite consensus disorder prediction 1 71 - -
Hepe02g0787 261 MobiDBLite consensus disorder prediction 1 39 - -
Hepe02g0787 261 MobiDBLite consensus disorder prediction 50 71 - -
Hepe02g0787 261 MobiDBLite consensus disorder prediction 231 261 - -
Hepe02g0787 261 FunFam Nuclear transcription factor Y subunit gamma 64 176 - -
Hepe02g0787 261 SUPERFAMILY Histone-fold 55 170 IPR009072 GO:0046982(InterPro)
Hepe02g0787 261 Pfam Core histone H2A/H2B/H3/H4 51 161 IPR007125 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0787 Hepe-Chr2:8894504 Hepe09g1825 Hepe-Chr9:57828189 3.45e-81 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54991 PF00125 Histone 1.00E-18 CL0012 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0787 K08066 - csv:101213813 390.963