Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0890 ATGGGTTCCTCCTCTTCGTCGTCGTTTTCAGTGATCAAATGGTTTTCTTCTTCCAGTAACAGCTCAACAATACTTCTCTCGAAGCTGTTTTTGCTTTTCTGCTTCCTCTTCTTCTTCCAGACTGAAGTTATTTTGGGCGATTCCGACAAATCCGTGCTTCTTCAGTTCAAAAATGCCGTTTCCGACCCATCCGGGTTGCTTTCGACCTGGAGTTCGACTGGCTCTGATTACTGCTCCTGGTTTGGCGTTTTATGCGACTTCAATTCTCGGGTTCTGTCGCTCAACATTTCCGGGAATGGTGCTGCTGCAGGTAATTCCAATGGCTTTTCATGCTCTGATTCTTCTAAATTTCCTCTTTATGGGCTTGGAATCAGGAGGGCTTGTGTGGGTATTAGAGGCGCCTCGCTGATTGGGAAGCTTCCGTTGGTGATTGGGAAGCTCACTGAGCTTAGGATTTTGTCGCTTCCGTTTCATGGGTTTGAGGGTGAAATTCCTTCTGAAATCTTGGGATTGAAGAACCTTGAGGTTCTTGATCTGGAAGGAAACTCTGTAACTGGGGTGCTTCGTTATGATTTTCCCAGGCTTGGCAAATTGCGGGTTCTCAATCTTGGATTCAATAGGCTTACTGGTGAGATTCCTAGCTCGCTTTCGGGTTGTGCCAGTTTAGAGATCTTGAATTTAGCTGGGAATCAGTTGAATGGGACAATTCCACAGTTTGTTGGTCGGTTGAGAGGAGTCTACTTGTCTTTCAATTGGTTTACGGGTTCCATTCCGAGTGAGCTTGGGAATAACTGTGGGAAGCTTGAGCATCTCGACCTGTCTGGTAATTTTTTGTTTGGTGGGATTCCGACCAATTTGGGAAATTGCAGTCAGTTGCGGACACTGTTGCTGTATTCTAATATGCTGGAGGAGGCCATTCCAGCACAAATTGGTAAGTTGCAGATGCTGGAAGTGCTTGATCTTTCCAGGAATAGCCTCAGTGGTCCGATTCCCTCCGAGCTCGGAAACTGCTTGCAGTTGTCCGTTCTCGTGCTCTCGAATCTCTTCAATCCGATTCCTAAGATCAATTACCCAGATGAAGAACTTAGCGATGATAGTTTTAACTATTTTGCCGGTGGTATACCTGAGACAATTACAATCCTTCCAAAGTTAAGGGTCTTGTGGGCCCCAAGTGCAAACCTCAATGGCAGATTCCCTTCCAAATGGGGCAAGTGTGAAGGCTTGGAGATGATCAACTTAGCTGGTAATTATCTTTATGGGGAGCTTCCTAGTGGGTTTAGCGTATGCAAAAAGCTCAAAGTCCTTGATTTAAGCTCGAACCGGCTTTCTGGAGAACTCGATAAAAACCTTCCAGTTCCTTATATGACTCTGTTTGATCTTAGCGGTAACCAGTTTATTGGTGAGATTCCTATGTTCTGTGACAATGATTGCTCACCCCCACGTTCAAATGGATATTTGGATCTTGCCGATGCACCGTCTCGGTATCTTGCATTTTTTGCCACTAGTATTCGAGGTGCAACCTCTTTTGAATCTCTTGGGGATGGTGATCTGATAGTACATAACTTTGGGGACAATAACTTTACGGGCAATGTTCTATCCTTCCCATTTCCACGCGAAGGATTGGCAAGGAAAATTGTTTATGCCTATCTTGTGGGTGGGAATAAGCTCACGGGACCATTTCCTGATAGTTTGTTTGAGAAATGCGACGATTTGGGAGGATTGATCTTTAATATTAGCAGCAATAAAATCTCTGGTCCGTTTTCTGTGACAATTGGTAAAAAGTGTGGTTCTCTTAAGTTCTTGGATGCATCTGATAATCAGATGACTGGGCAGGTACCGTCTAGCTTTGGAGAGCTGTTATCTCTGAATCACTTGAACTTAAGTTGGAACAAGTTTCAGTATCAAATACCGACTTCCCTCGGACAGATGGCTGATTTGAAGTACCTTTCCTTGGCTGGCAATAACTTTAATGGTTCTATACCTTCTACCTTGGGTAAGTTGCAGTCTTTGGAGTTGTTGGATCTTTCATATAACGATCTTTCAGGTGAAATTCCAATAGATCTTGTTAACTTGGAAGGCTTAAAAGTTCTGCTGCTCAACAATAATTCACTCTCTGGACAGGTTCCCTCTGGTTTGGCAAATCTTACCACACTCTCTGCATTTAATGTGTCATTCAATAACTTGTCTGGTTCCCTGCCATCAAATAACATGATTAAATGTAGTGGTGCTATCGGAAATCCCTACCTACACCCGTGCCATGTGTTTTCTCTGGGAGTGCCATCAGCCGAAATGCAAGGTACCGTTGGCGACCCGAGTAGTCTTGCAGCTTCACCGTCTGGTGTTGCACCCCAAACAAGTGGAGGTGGCAGCTTCAATTCAATTGAGATAGCATCCATTACATCTGCCTCCGCCATTGTTTCTGTTCTTATTGCTTTGATTATCCTATTTCTATATACCCGAAAGTGGAACTCGAGGTCTAAAGTTCTTGGATCAATGAGGAAGGAAGTGACGGTTTTTACTGACATTGGGGTTTCCCTGACGTTTGAGAATGTGGTGCGTGCCACGAGCAATTTCAATGCAAGCAACTGCATTGGCAGTGGAGGGTTTGGGGCAACTTACAAGGCAGAGATCGCGTCGGGAATGCTGGTCGCAATAAAACGGCTTTCTGTAGGTCGATTTCAAGGCGTCCAACAGTTCGATGCAGAAATTAAAACTCTTGGAAGGTTGCGCCATCCGAATCTCGTCACCTTAATTGGTTACCATGCCAGTGAAACAGAGATGTTCCTGATATATAATTATTTGCCAGGTGGTAATTTAGAAAAATTCATCCAGGAGAGGTCCACAAGGGCAGTCGATTGGAGAATACTTCACAAGATTGCACTGGACATAGCCCGCGCGCTCGCATATCTTCACGATCAGTGTGTTCCACGAGTCCTCCACCGCGATGTGAAACCGAGCAATATACTATTAGACGATGATTTCAATGCTTATCTCTCTGATTTTGGATTGGCCAGGCTTCTTGGGACTTCTGAAACCCATGCTACCACAGGTGTGGCTGGAACTTTTGGCTACGTCGCTCCCGAATATGCCATGACTTGCCGTGTCTCTGATAAAGCAGACGTGTACAGTTACGGCGTGGTGCTTCTCGAGCTACTCTCGGACAAGAAAGCACTAGATCCCTCATTTTCCCCATACGGTAATGGTTTTAACATAGTAGCTTGGGCATGCATGCTGCTTCGGCAGGGGCGCGCCAAGGAATTCTTCACAGCAGGGTTATGGGAGGTAGGTCCCCACGATGATTTGGTTGAAGTATTACACTTAGCAGTTGTGTGTACAGTTGACTCTCTCTCGACAAGGCCAACGATGAAGCAGGTTGTACGACGGCTTAAGCAGCTTCAACCGCCATCGTGTTAG 3414 45.31 MGSSSSSSFSVIKWFSSSSNSSTILLSKLFLLFCFLFFFQTEVILGDSDKSVLLQFKNAVSDPSGLLSTWSSTGSDYCSWFGVLCDFNSRVLSLNISGNGAAAGNSNGFSCSDSSKFPLYGLGIRRACVGIRGASLIGKLPLVIGKLTELRILSLPFHGFEGEIPSEILGLKNLEVLDLEGNSVTGVLRYDFPRLGKLRVLNLGFNRLTGEIPSSLSGCASLEILNLAGNQLNGTIPQFVGRLRGVYLSFNWFTGSIPSELGNNCGKLEHLDLSGNFLFGGIPTNLGNCSQLRTLLLYSNMLEEAIPAQIGKLQMLEVLDLSRNSLSGPIPSELGNCLQLSVLVLSNLFNPIPKINYPDEELSDDSFNYFAGGIPETITILPKLRVLWAPSANLNGRFPSKWGKCEGLEMINLAGNYLYGELPSGFSVCKKLKVLDLSSNRLSGELDKNLPVPYMTLFDLSGNQFIGEIPMFCDNDCSPPRSNGYLDLADAPSRYLAFFATSIRGATSFESLGDGDLIVHNFGDNNFTGNVLSFPFPREGLARKIVYAYLVGGNKLTGPFPDSLFEKCDDLGGLIFNISSNKISGPFSVTIGKKCGSLKFLDASDNQMTGQVPSSFGELLSLNHLNLSWNKFQYQIPTSLGQMADLKYLSLAGNNFNGSIPSTLGKLQSLELLDLSYNDLSGEIPIDLVNLEGLKVLLLNNNSLSGQVPSGLANLTTLSAFNVSFNNLSGSLPSNNMIKCSGAIGNPYLHPCHVFSLGVPSAEMQGTVGDPSSLAASPSGVAPQTSGGGSFNSIEIASITSASAIVSVLIALIILFLYTRKWNSRSKVLGSMRKEVTVFTDIGVSLTFENVVRATSNFNASNCIGSGGFGATYKAEIASGMLVAIKRLSVGRFQGVQQFDAEIKTLGRLRHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRAVDWRILHKIALDIARALAYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKALDPSFSPYGNGFNIVAWACMLLRQGRAKEFFTAGLWEVGPHDDLVEVLHLAVVCTVDSLSTRPTMKQVVRRLKQLQPPSC 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 10655303 10659305 + Hsped.02g08900.1 Hepe02g0890 562391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0890 1137 Pfam Protein kinase domain 861 1059 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g0890 1137 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 822 933 - -
Hepe02g0890 1137 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 31 1132 IPR050647 -
Hepe02g0890 1137 Gene3D Ribonuclease Inhibitor 543 635 IPR032675 -
Hepe02g0890 1137 CDD STKc_IRAK 864 1132 - -
Hepe02g0890 1137 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 363 446 - -
Hepe02g0890 1137 ProSitePatterns Serine/Threonine protein kinases active-site signature. 978 990 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g0890 1137 Gene3D Ribonuclease Inhibitor 242 356 IPR032675 -
Hepe02g0890 1137 Gene3D Ribonuclease Inhibitor 360 533 IPR032675 -
Hepe02g0890 1137 ProSiteProfiles Protein kinase domain profile. 858 1132 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g0890 1137 Pfam Leucine rich repeat 173 232 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Gene3D Transferase(Phosphotransferase) domain 1 934 1134 - -
Hepe02g0890 1137 ProSitePatterns Protein kinases ATP-binding region signature. 864 886 IPR017441 GO:0005524(InterPro)
Hepe02g0890 1137 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 262 353 - -
Hepe02g0890 1137 SUPERFAMILY RNI-like 132 470 - -
Hepe02g0890 1137 Gene3D Phosphorylase Kinase; domain 1 820 933 - -
Hepe02g0890 1137 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 934 1136 - -
Hepe02g0890 1137 Pfam Leucine rich repeat N-terminal domain 47 86 IPR013210 -
Hepe02g0890 1137 Gene3D Ribonuclease Inhibitor 636 753 IPR032675 -
Hepe02g0890 1137 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 515 757 - -
Hepe02g0890 1137 SUPERFAMILY Protein kinase-like (PK-like) 843 1129 IPR011009 -
Hepe02g0890 1137 SMART LRR_typ_2 195 219 IPR003591 -
Hepe02g0890 1137 SMART LRR_typ_2 265 289 IPR003591 -
Hepe02g0890 1137 SMART LRR_typ_2 171 194 IPR003591 -
Hepe02g0890 1137 SMART LRR_typ_2 691 715 IPR003591 -
Hepe02g0890 1137 SMART LRR_typ_2 619 643 IPR003591 -
Hepe02g0890 1137 SMART LRR_typ_2 313 337 IPR003591 -
Hepe02g0890 1137 SMART LRR_typ_2 667 690 IPR003591 -
Hepe02g0890 1137 Pfam Leucine Rich Repeat 621 643 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Pfam Leucine Rich Repeat 597 619 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Pfam Leucine Rich Repeat 316 337 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Pfam Leucine Rich Repeat 669 691 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Pfam Leucine Rich Repeat 646 667 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Pfam Leucine Rich Repeat 694 715 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Pfam Leucine Rich Repeat 431 450 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Pfam Leucine Rich Repeat 267 289 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Pfam Leucine Rich Repeat 243 263 IPR001611 GO:0005515(InterPro)
Hepe02g0890 1137 Gene3D Ribonuclease Inhibitor 46 241 IPR032675 -
Hepe02g0890 1137 PRINTS Leucine-rich repeat signature 667 680 - -
Hepe02g0890 1137 PRINTS Leucine-rich repeat signature 432 445 - -
Hepe02g0890 1137 SMART serkin_6 858 1136 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g0890 1137 SUPERFAMILY L domain-like 575 733 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0890 Hepe-Chr2:10655303 Hepe02g2485 Hepe-Chr2:71389676 2.15e-127 dispersed
Hepe02g0890 Hepe-Chr2:10655303 Hepe02g3246 Hepe-Chr2:82026244 6.75e-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72541 PF00069 Pkinase 8.30E-44 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0890 - - - 0.0