Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0915 ATGGGAAGAGGGAGAGTTCAGCTTAAGAGAATAGAGAACAAAATCAGTCGCCAAGTCACCTTCTCAAAGCGTAGAGCTGGTTTGCTCAAAAAGGCCCATGAGATCTCTGTCCTTTGTGATGCTGATGTTGCTTTGATCGTCTTCTCCACCAAAGGAAAGCTCTTCGAGTACTCTACCGATTCCAGCATGGAGAAGATCTTAGAAAAATATGAGAGATATTCTTATGCAGAGAGACCATTGGCCCCAAATGGAGATTCTGAATTACAGGTAAGTTGGTGTCAGGAGTACCCTAAACTTGCAGCCAGAGTGGAAATTGTACAGAAGAACTTAAGGCATTATTTGGGAGAAGAACTTGACCCTTTGAATTTGAGAGAACTTCAAAGCTTGGAGCAACAACTTGATTCATCACTCAAGCGCATAAGAGCTAGAAAGAACCAACTAATGCAAGAATCCATTTCAATGCTACACAAAAAGGAAAGGGAATTGCAAGAGGAGAACAGGCAGCTAGCAAATAAGGTCAAAGAGAATGAGAAGGTTTTGGTTGAACTTGGACACTGTGAGCTCCCAAACTTGGTTCATAATCAGTCCTTTTTTGCAATGCCACCACCAATTCCTTCTTCATCTGTTGGAGTAAACTTGCATGGGAGAGGATCAGATGAAGATGAAACAAGGCCAACAAGCACCAACAGCATCCAAATACCAGCATGGATGCTCAGCCATGTGACTGATAATCCTCTCAACTAA 744 42.47 MGRGRVQLKRIENKISRQVTFSKRRAGLLKKAHEISVLCDADVALIVFSTKGKLFEYSTDSSMEKILEKYERYSYAERPLAPNGDSELQVSWCQEYPKLAARVEIVQKNLRHYLGEELDPLNLRELQSLEQQLDSSLKRIRARKNQLMQESISMLHKKERELQEENRQLANKVKENEKVLVELGHCELPNLVHNQSFFAMPPPIPSSSVGVNLHGRGSDEDETRPTSTNSIQIPAWMLSHVTDNPLN 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11016076 11023569 - Hsped.02g09150.1 Hepe02g0915 562416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0915 247 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0915 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0915 247 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0915 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0915 247 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0915 247 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe02g0915 247 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0915 247 MobiDBLite consensus disorder prediction 209 228 - -
Hepe02g0915 247 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Hepe02g0915 247 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0915 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 199 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe02g0915 247 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0915 247 Coils Coil 123 182 - -
Hepe02g0915 247 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe02g0915 247 Pfam K-box region 89 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe02g0915 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0915 Hepe-Chr2:11016076 Hepe10g0566 Hepe-Chr10:6750873 1.51e-76 dispersed
Hepe02g0915 Hepe-Chr2:11016076 Hepe02g0917 Hepe-Chr2:11042682 2.73e-51 proximal
Hepe04g2099 Hepe-Chr4:75823042 Hepe02g0915 Hepe-Chr2:11016076 1.47e-33 transposed
Hepe02g0915 Hepe-Chr2:11016076 Hepe07g2444 Hepe-Chr7:68775594 2.51e-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54999 PF01486 K-box 3.10E-28 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0915 K09264 - csv:101218674 414.075