Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0917 ATGGGAAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAGATAAACAGACAAGTGACATTTGCAAAGAGAAGAAATGGGTTATTGAAGAAAGCTTATGAACTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAATCGTGGCAAACTCTATGAGTTCTGTAGTACTTCCAACATGCTCAAAACACTCGAAAGGTACCAAAAATGCAGTTATGGAGCGGTGGAGGTCACGAAACCGGCCAAAGAACTCGAGAGTAGCTATAGAGAATACTTGAAGCTGAAGGGTAGGTTTGAGTCTCTACAAAGAACTCAGAGAAATCTGCTTGGTGAGGAATTGGGTCCATTGAACTCAAAAGAGCTTGAGCAGCTGGAGCGTCAGCTAGAGTCTTCTTTGAAGCAAGTTAGGTCCACTAAGACTCAGTACATGTTGGACCAGCTATCTGATCTTCAGAACAAGGAACAAATGCTGATTGAAACCAACAGAGCTCTGACATTAAAGCTGGAAGAAATAAGTTCAAGAAATAACATAAGGCTTACATGGGAAGGTGGAGACCAAAGCATGTCATATGGTCCACAAAATGCCCAAACTCAAGGCTTCTTTCAGCCACTAGATTGCAATCCCACTTTGCAAATTGGGTCAGTTTTTTTATATATTAATTTATTAAGAAAATGA 684 40.2 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSTSNMLKTLERYQKCSYGAVEVTKPAKELESSYREYLKLKGRFESLQRTQRNLLGEELGPLNSKELEQLERQLESSLKQVRSTKTQYMLDQLSDLQNKEQMLIETNRALTLKLEEISSRNNIRLTWEGGDQSMSYGPQNAQTQGFFQPLDCNPTLQIGSVFLYINLLRK 227
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11042682 11051066 - Hsped.02g09170.1 Hepe02g0917 562418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0917 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 Pfam K-box region 83 171 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe02g0917 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 Gene3D - 13 83 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe02g0917 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe02g0917 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g0917 227 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe02g0917 227 FunFam MADS-box transcription factor 1 13 87 - -
Hepe02g0917 227 Coils Coil 121 144 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0917 Hepe-Chr2:11042682 Hepe03g1115 Hepe-Chr3:64068623 7.00e-96 dispersed
Hepe02g0915 Hepe-Chr2:11016076 Hepe02g0917 Hepe-Chr2:11042682 2.73e-51 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55000 PF01486 K-box 3.10E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0917 K09264 - csv:101208204 407.527