Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0921 ATGCTCCTCCTCCCTCCATCTGCTTCTTCCTCAACTGCACGAGAGAACTCGTTTGCTCGACTCAATCGACCGAGATTGGATTCGACTCACTTGACAACAATGAGGTTGTTTGTTTCAGCTGTCTTCCTTTTTGTCATATTTTCTTGTGGAGCTGCGTACGATCCGTTGGATCCGAATGGGAACATTACGATCAAATGGGACGTCATGTCATGGACGTCTGACGGTTATGTGGCGACTGTGACGTTGAACAACTTCCAAATGTACCGGCACATAATGAGTCCTGGATGGACGATGGGGTGGACGTGGGCGAAAAAGGAAGTGATATGGTCGATGGTGGGGTCGCAGACGACGGAGCAAGGCGACTGCTCCAAGTTCAAAGGAAATATTCCTCACTGTTGTAAGAAAAACCCCACTGTTGTGGATTTGATGCCTGGAGTACCTTACAACCAACAGTTTACAAACTGCTGCAAAGGTGGGGTTGTGGCTGCTTGGGGACAAGACCCTCAAGCTGCTGTTTCAGCCTTTCAGCTCAGTATTGGCCAAGCAGGTACTTCAAACAAGACTGTCAAACTCCCCAAGAACTTCACTTTGCTCGGTCCCGGCCCCGGATACACTTGTGGCCCTGCCAAGGTCGTCCCTTCAACCGCCTTCCTCACGCCCGATCGTCGTCGCAAAACTCAAGCTCTGATGACTTGGAATGTGACTTGCACTTACTCTCAATTTCTGGCCAGAAAGAACCCTAATTGTTGTGTTTCTTTCTCGTCTTTCTACAACGATACGATCACATCATGTCCGTCTTGCACTTGTGGTTGCCAAAACAAGAACAACTGCGTCAAGAGTGATTCTAAGATTCTGAAGCTGGTTGGACTGAATACACCGAAGAAAGACAATGCCCCGTTGCTACAGTGCACACATCATATGTGCCCAGTTCGAGTTCACTGGCATGTGAAGCAAAATTACAAGGAATATTGGCGGGTGAAGATCGCCATCACAAATTTCAACTACCGGATGAACTATTCGCTTTGGTCTCTCGTCGTTCAGCACCCGAATCTGAACAATGTAACCCAAGTTTTCAGCTTTGACTACAAACCCCTTGTTCCCTATGAATCAATCAATGACACAGGAATGTTTTACGGGACGAAGTTCTACAACGACCTTCTGATGGAAGCGGGGCCATTTGGGAATGTACAGTCGGAGGTGTTGCTGCAAAAGGACCAGAACACCTTCACCTTCAAGCAGGGATGGGCATTTCCTCGAAAAGTTTACTTCAATGGAGACGAGTGCATGCTTCCCCCACCCGACACATACCCATTCCTGCCCAACGCCGCCCACCAAAGGCCCATTGCCCTCTCAACTTCAATTGCTTTGCTGCTGCTCTTCCTGCTACTAGCTATTTGCTGA 1401 48.54 MLLLPPSASSSTARENSFARLNRPRLDSTHLTTMRLFVSAVFLFVIFSCGAAYDPLDPNGNITIKWDVMSWTSDGYVATVTLNNFQMYRHIMSPGWTMGWTWAKKEVIWSMVGSQTTEQGDCSKFKGNIPHCCKKNPTVVDLMPGVPYNQQFTNCCKGGVVAAWGQDPQAAVSAFQLSIGQAGTSNKTVKLPKNFTLLGPGPGYTCGPAKVVPSTAFLTPDRRRKTQALMTWNVTCTYSQFLARKNPNCCVSFSSFYNDTITSCPSCTCGCQNKNNCVKSDSKILKLVGLNTPKKDNAPLLQCTHHMCPVRVHWHVKQNYKEYWRVKIAITNFNYRMNYSLWSLVVQHPNLNNVTQVFSFDYKPLVPYESINDTGMFYGTKFYNDLLMEAGPFGNVQSEVLLQKDQNTFTFKQGWAFPRKVYFNGDECMLPPPDTYPFLPNAAHQRPIALSTSIALLLLFLLLAIC 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11095838 11097705 + Hsped.02g09210.1 Hepe02g0921 562422

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0921 466 PIRSF COBRA 26 466 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
Hepe02g0921 466 PANTHER PROTEIN COBRA 37 459 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)|GO:0046658(PANTHER)|GO:0052324(PANTHER)
Hepe02g0921 466 Pfam COBRA-like protein 76 239 IPR006918 GO:0010215(InterPro)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0921 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0448 Hepe-Chr2:4301509 Hepe02g0921 Hepe-Chr2:11095838 2.67e-134 dispersed
Hepe02g0921 Hepe-Chr2:11095838 Hepe09g0286 Hepe-Chr9:2451841 4.96e-280 dispersed
Hepe02g0921 Hepe-Chr2:11095838 Hepe02g0922 Hepe-Chr2:11097950 2.48e-220 tandem
Hepe01g1303 Hepe-Chr1:78236816 Hepe02g0921 Hepe-Chr2:11095838 6.22e-40 transposed
Hepe02g0921 Hepe-Chr2:11095838 Hepe07g2448 Hepe-Chr7:68827158 1.10e-215 wgd
Hepe02g0921 Hepe-Chr2:11095838 Hepe09g0285 Hepe-Chr9:2448414 6.09e-238 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0285 . 48 447 COBRA Gene Family AT5G60920 79.6 4.1e-209 724.2
Hepe02g0922 . 42 479 COBRA Gene Family AT5G60920 69.2 6.3e-194 673.7
Hepe09g0286 . 115 514 COBRA Gene Family AT5G60920 68.9 1.7e-178 622.5
Hepe02g0921 . 64 459 COBRA Gene Family AT5G60920 67.9 2.2e-178 622.1
Hepe07g2448 . 19 416 COBRA Gene Family AT5G60920 61.7 1.1e-150 530.0
Hepe07g0518 . 57 442 COBRA Gene Family AT5G60920 54.8 7.6e-131 464.2
Hepe09g0285 . 18 452 COBRA Gene Family AT3G02210 74.1 1.4e-207 719.2
Hepe02g0922 . 12 485 COBRA Gene Family AT3G02210 67.6 1.2e-196 682.9
Hepe02g0921 . 38 462 COBRA Gene Family AT3G02210 66.6 3.4e-180 628.2
Hepe09g0286 . 87 513 COBRA Gene Family AT3G02210 66.5 3.7e-179 624.8
Hepe07g2448 . 5 412 COBRA Gene Family AT3G02210 60.2 1.6e-153 539.7
Hepe07g0518 . 27 458 COBRA Gene Family AT3G02210 54.7 5.8e-140 494.6
Hepe09g0285 . 16 446 COBRA Gene Family AT3G29810 73.9 5.8e-201 697.2
Hepe02g0922 . 26 485 COBRA Gene Family AT3G29810 66.1 6.6e-189 657.1
Hepe02g0921 . 47 461 COBRA Gene Family AT3G29810 66.5 2.6e-177 618.6
Hepe09g0286 . 98 496 COBRA Gene Family AT3G29810 67.7 5.4e-175 610.9
Hepe07g2448 . 7 419 COBRA Gene Family AT3G29810 59.5 2.9e-152 535.4
Hepe07g0518 . 39 456 COBRA Gene Family AT3G29810 53.8 6.9e-138 487.6
Hepe02g0921 . 42 372 COBRA Gene Family AT5G15630 83.4 6.9e-178 620.2
Hepe09g0286 . 92 423 COBRA Gene Family AT5G15630 83.4 7.7e-177 616.7
Hepe09g0285 . 31 361 COBRA Gene Family AT5G15630 73.5 4.2e-151 531.2
Hepe02g0922 . 27 357 COBRA Gene Family AT5G15630 68.3 6.3e-147 517.3
Hepe07g2448 . 5 323 COBRA Gene Family AT5G15630 64.3 4.7e-134 474.6
Hepe02g0922 . 8 218 COBRA Gene Family AT5G60950 58.2 2.4e-64 242.3
Hepe09g0285 . 18 224 COBRA Gene Family AT5G60950 56.3 2.6e-63 238.8
Hepe02g0921 . 41 240 COBRA Gene Family AT5G60950 54.2 3.3e-58 221.9
Hepe09g0286 . 111 291 COBRA Gene Family AT5G60950 56.4 1.8e-56 216.1
Hepe07g2448 . 15 195 COBRA Gene Family AT5G60950 50.3 1.7e-46 183.0
Hepe07g0518 . 30 439 COBRA Gene Family AT1G09790 59.6 3.2e-151 531.9
Hepe09g0286 . 101 494 COBRA Gene Family AT1G09790 53.7 3.3e-132 468.8
Hepe09g0285 . 32 432 COBRA Gene Family AT1G09790 53.1 7.5e-132 467.6
Hepe02g0921 . 36 444 COBRA Gene Family AT1G09790 51.5 5.3e-130 461.5
Hepe05g1403 . 31 645 COBRA Gene Family AT4G16120 65.7 8.8e-254 873.2
Hepe07g1196 . 67 676 COBRA Gene Family AT4G16120 53.6 7.8e-202 700.7
Hepe01g1303 . 22 469 COBRA Gene Family AT4G16120 54.4 6.5e-156 548.1
Hepe05g1403 . 6 651 COBRA Gene Family AT3G16860 61.9 7.6e-242 833.6
Hepe07g1196 . 58 668 COBRA Gene Family AT3G16860 51.1 2.3e-190 662.5
Hepe01g1303 . 22 485 COBRA Gene Family AT3G16860 51.6 4.6e-146 515.4
Hepe05g1403 . 9 632 COBRA Gene Family AT5G49270 61.8 1.1e-240 829.7
Hepe07g1196 . 59 661 COBRA Gene Family AT5G49270 51.4 2.5e-192 669.1
Hepe01g1303 . 23 491 COBRA Gene Family AT5G49270 50.6 1.1e-150 530.8
Hepe07g1196 . 1 680 COBRA Gene Family AT3G20580 59.6 6.6e-249 857.1
Hepe05g1403 . 24 647 COBRA Gene Family AT3G20580 53.2 6.1e-202 701.0
Hepe01g1303 . 26 492 COBRA Gene Family AT3G20580 61.6 4.4e-184 641.7
Hepe07g1196 . 51 681 COBRA Gene Family AT4G27110 60.7 2.9e-236 815.1
Hepe05g1403 . 27 647 COBRA Gene Family AT4G27110 52.0 1.6e-194 676.4
Hepe01g1303 . 26 468 COBRA Gene Family AT4G27110 63.3 1.7e-175 613.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001485 1 3 2 1 2 2 4 2 2 1 2 2 4 3 3 4 3 2 4 2 3 2 3 3 3 3 2 2 2 1 73