Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0946 ATGGATTCCCCAATTTCCTCATTCCTTCTGCTCTTTTCCTTTTCCCTTCTCTTTACAATCGGAGCTCCGTTCGATTTCTACACCTCCTGCAGCAATCACTTCAACTGCAGTGAAATCACCAACGTCGGCTTCCCGTTCTGGGGCGACGGCCGCCCCGCCGGCTGCGGCCATCCGGCGCTGAAATTGACCTGCGAAGAAGGAAGCAATACGACGATCGTAATAATGGAAGTCAAATACCAGATTCTCAAATTCATCCGCAAAAACAATTCACAAACGCTGACCATCGCTAGAGCCGATTACATGGACGGACTCTGCCCTAACAAATTCATCAACACCACAATCGATTACAATCTCTTCGATACACTTTCTAATTATCAAAACATTACCTTGCTCTATTGCTCCTCTTCTCCGTCTCCGTTTGGACGAGTCGCCGGACAATTTAGCTGTCCTGGATATGACTTCGGCGTCATTGACGCGAGCAACTCCAGCCCTAGCCTCTGCAACACGAGCGTGATCGTGCCGGTTTCTGTGGATTCTTTCTCGCCGGTGAGCGATGTTGTGAATTCCACTGAGATATTGAAGGTCATACAAGAGGGATTTGAGCTGAGCTTGAAGGACGACGGTCGATGTGGACTTTGTCAGGCGTCGGAGGGGGTTTGCGGCTTCGATTCCGGCTCGAATCGGACGACTTGCTACTGTCCTGTTGGCGGTGATGGTAATAACGGAGCTTGTCGGAATATACCGGCCGATGGAGATCAAAATCTCAAATTGAAGGTTGTTATTGGTGTTTGTGTTGGTTTGGGTTCGGTTGTCGCACTAATCTTCATTATGATCATATACATCTGTGGAAGACGTAGGCTATCAAGCAAAACATTATTAACATCCAAGAGCAAAAGGATGGGTATAAAATCCATAATGAATAATTATGGACCAAAGCGATACCATTACTCAGAGATAAAGAAATTCACGAACTCTTTTTCAAACAAAATTGGTGAAGGTGGATATGGCATTGTATATCGAGGTAAACTAGTTGATGGAACACTCGTAGCTATAAAAGTTCTAAAGGTGTCGAAAGGCAATGGTGAAGATTTCATAAACGAAGTTATGAGTATCACTAGAACTTCGCATGTCAATATAGTTAGTCTTTTAGGATTTTCTTATGACTCGAAGAAAATAGCTCTAGTGTATGAATTTATGGCCAATGGATCACTCGATAGATTCATGTCTATAAGTCGCGATCTTGAGATGGAAACGCTTCATAGAATCGTCGTAGGCGTGGCGAGAGGGTTAGAGTATTTGCATTGTGGTTGTAGTACAAGGATAGTACATTTTGACATAAAGCCTCAAAACATTCTCTTGGATGAAGATTTCAACCCTAAAATTTCCGACTTTGGCCTCGCGAAGCTCTGTAAAAGAAAGGAGAGTGCAATTTCAATGTTGGGAACTCGAGGGACTATTGGATTCATAGCACCGGAAGTTTTTAGTCGTGCATTTGGAATTGTCTCGTACAAATCTGATGTGTATAGCTATGGGATGTTGGTTCTTGATCTTGTATTGGGAGGAATAAGAAATCCTAATTATTCAAAATTATTATCTGATGAAAGTGAAATGTACTTTCCAAATTGGGTTTTCAAGAATTTTGAAATGGGTAAGAGTGTAAGAATGGACCAAAGTTTGATAGAGGAGGAGGAAGAAATGGAGAAGAAAATGGTTATGGTAGGTTTGTGGTGCATTCAAACATCTCCATTAGATAGACCTTCAATGAGTAGAGTCTTGGAGATGCTAGAGGGAAGCATTCACTCCTTGCAGATGCCTCCAAGACCTTCATTGGTTCAACCCAATAGTGCAACCCAACAATCTACCTCTGAATCATTATCATATGAGGCTATTTAA 1893 42.58 MDSPISSFLLLFSFSLLFTIGAPFDFYTSCSNHFNCSEITNVGFPFWGDGRPAGCGHPALKLTCEEGSNTTIVIMEVKYQILKFIRKNNSQTLTIARADYMDGLCPNKFINTTIDYNLFDTLSNYQNITLLYCSSSPSPFGRVAGQFSCPGYDFGVIDASNSSPSLCNTSVIVPVSVDSFSPVSDVVNSTEILKVIQEGFELSLKDDGRCGLCQASEGVCGFDSGSNRTTCYCPVGGDGNNGACRNIPADGDQNLKLKVVIGVCVGLGSVVALIFIMIIYICGRRRLSSKTLLTSKSKRMGIKSIMNNYGPKRYHYSEIKKFTNSFSNKIGEGGYGIVYRGKLVDGTLVAIKVLKVSKGNGEDFINEVMSITRTSHVNIVSLLGFSYDSKKIALVYEFMANGSLDRFMSISRDLEMETLHRIVVGVARGLEYLHCGCSTRIVHFDIKPQNILLDEDFNPKISDFGLAKLCKRKESAISMLGTRGTIGFIAPEVFSRAFGIVSYKSDVYSYGMLVLDLVLGGIRNPNYSKLLSDESEMYFPNWVFKNFEMGKSVRMDQSLIEEEEEMEKKMVMVGLWCIQTSPLDRPSMSRVLEMLEGSIHSLQMPPRPSLVQPNSATQQSTSESLSYEAI 630
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11439939 11443440 - Hsped.02g09460.1 Hepe02g0946 562447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0946 630 PANTHER RUST RESISTANCE KINASE LR10-RELATED 236 617 IPR045874 GO:0004672(InterPro)
Hepe02g0946 630 Gene3D Phosphorylase Kinase; domain 1 298 398 - -
Hepe02g0946 630 Gene3D Transferase(Phosphotransferase) domain 1 399 604 - -
Hepe02g0946 630 ProSiteProfiles Protein kinase domain profile. 324 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g0946 630 MobiDBLite consensus disorder prediction 606 630 - -
Hepe02g0946 630 Pfam Wall-associated receptor kinase C-terminal 161 234 IPR032872 -
Hepe02g0946 630 Pfam Wall-associated receptor kinase galacturonan-binding 30 96 IPR025287 GO:0030247(InterPro)
Hepe02g0946 630 Pfam Protein kinase domain 327 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g0946 630 FunFam PR5-like receptor kinase 399 607 - -
Hepe02g0946 630 SUPERFAMILY Protein kinase-like (PK-like) 306 596 IPR011009 -
Hepe02g0946 630 SMART serkin_6 324 595 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g0946 630 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524(InterPro)
Hepe02g0946 630 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0946 Hepe-Chr2:11439939 Hepe02g2606 Hepe-Chr2:73352032 1.13e-69 dispersed
Hepe02g0946 Hepe-Chr2:11439939 Hepe02g0947 Hepe-Chr2:11446527 9.29e-75 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72545 PF00069 Pkinase 1.70E-46 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0946 - - - 0.0