Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0971 ATGGTTCAGCCGAAATTGCGATGGGGGGAGCTCGACGACGACGATGGAGATCTTGATTTTCTCCTTCCGCCGAAGCAAATTATCGGGCCAGACGTAAATGGGTTGAAGAAAACTATTGAGTATCAGTTCAACGAAGATGGTAACAAGGTCAAAATCATAACCACCTCTCGTACTCGCAAGCTCGCCCATGCTCGCCTGAGTAAACATGCCGTGGAGCGCCGATCTTGGCCCAAGTTCGGCGATGCTGTCCATGAAGATGTCGGCAGTAGGCTCACTATGGTCTCCACTGAGGAGATTCTTCTCGAGCGCCCTCGTGCTCCTGGTAGCAAACCAGAGGAGCCAAAGGTTGCTGGAGACCCTCTAGCCCAACTTGGAAAAGGAGGAGCTGTTCTTATGGTCTGTCGAACTTGTGGTAAAAAGGGTGATCACTGGACCTCTAGATGCCCTTACAAGGACCTGGTACCACAAGCTGATGGATTGGATAAGACTGTTGCACCAGAGGCGACAACTGCTGCTCCTGCTGCAACGAAGGGAACATACATTTCTCCAGGTATGAGAGCAGGAGCAGAGAGGACTGGAACTGACATGAGACGTAGGAATGATGAAAACTCTGTTCGTGTCACCAACCTTTCGGAGGACACTAGAGAGCCCGACTTGCTTGAGCTCTTCCGACCTTTTGGTGCTGTTAGCCGAGTTTATGTGGCTGTTGATCAAAAGACTAGCATGAGCAGAGGATTTGGTTTTGTAAACTTTGTGAACCGCGACGATGCACAAAGATCAATTAGCAAACTCAATGGATATGGTTATGATAATCTCATCCTTAGAGTTGAGTGGGCCACTCCAAGGGCAACTTAA 855 49.36 MVQPKLRWGELDDDDGDLDFLLPPKQIIGPDVNGLKKTIEYQFNEDGNKVKIITTSRTRKLAHARLSKHAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPRAPGSKPEEPKVAGDPLAQLGKGGAVLMVCRTCGKKGDHWTSRCPYKDLVPQADGLDKTVAPEATTAAPAATKGTYISPGMRAGAERTGTDMRRRNDENSVRVTNLSEDTREPDLLELFRPFGAVSRVYVAVDQKTSMSRGFGFVNFVNRDDAQRSISKLNGYGYDNLILRVEWATPRAT 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11780415 11782276 - Hsped.02g09710.1 Hepe02g0971 562472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0971 284 Gene3D - 168 284 IPR012677 -
Hepe02g0971 284 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 5 283 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Hepe02g0971 284 SMART rrm1_1 204 277 IPR000504 GO:0003723(InterPro)
Hepe02g0971 284 SUPERFAMILY RNA-binding domain, RBD 201 282 IPR035979 GO:0003676(InterPro)
Hepe02g0971 284 CDD RRM_eIF3G_like 204 279 IPR034240 -
Hepe02g0971 284 CDD eIF3G 33 152 IPR024675 -
Hepe02g0971 284 PIRSF Transl_init_eIF-3_RNA-bind 1 284 IPR017334 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Hepe02g0971 284 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 281 IPR000504 GO:0003723(InterPro)
Hepe02g0971 284 Pfam Eukaryotic translation initiation factor 3 subunit G 28 153 IPR024675 -
Hepe02g0971 284 FunFam Eukaryotic translation initiation factor 3 subunit G 168 284 - -
Hepe02g0971 284 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 39 279 - -
Hepe02g0971 284 Pfam RNA recognition motif 205 271 IPR000504 GO:0003723(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0971 Hepe-Chr2:11780415 Hepe07g2548 Hepe-Chr7:69918431 3.59e-191 dispersed
Hepe02g0971 Hepe-Chr2:11780415 Hepe10g0571 Hepe-Chr10:6850760 4.24e-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0971 K03248 - csv:101207022 520.776