Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0973 ATGCCGGAAGAAACCATGCCGATAGATTACGTCATGGAAGCCGCCTCTGGACCACACTTCTCCGGCCTTCGACTCGACGGACGTCTCTCCTCTCCGCCGTCTTCCTCAACTTCTCCTCCGACTCACCGCTATTCACTTTCCGCTTCCTCTGCGCCGGCCGATGCCAACTCTCCTAAGCAGCCCTTCGTCATCGGTGTTTCTGGAGGTACTGCTTCTGGGAAGACGACTGTGTGTGACATGATTATCCAGCAACTTCATGATCACAGGGTTGTGCTTATCAATCAGGACTCATTTTACCGCGGGTTGACAGCTGAGGAACTAGAATGCGTGCATGAGTATAACTTTGATCATCCTGATTCTTTTGACACCGAGCAGCTTGTTGATTGCGTCCAGAAGCTAAAGAGTGGGCAATCTTACCATGTCCCAATTTATGATTTTAAAACTCACCAACGCTGTGTAGATAGCTTTCGACAGGTAAATGCATCTAATGTTATTATCTTGGAAGGTATTTTGGTTTTTCATGACCAAAGAGTCCGCAATCTGATGAATATGAAGATATTTGTCGATACAGATGCTGATGTGAGGCTTGCTCGTAGAATTAGACGTGATACGGTAGAAAGGGGCAGGGACATTAACTCCGTTCTTGAACAGTATGCAAAGTTTGTAAAACCTGCTTTTGATGATTTCGTTCTGCCGTCAAAGAAGTACGCCGATGTGATCATACCACGTGGGGGTGATAACCATGTTGCAGTTGATTTGATTGTGCAACACATCCATACAAAGTTAGGCCAGCATGACCTATGCAAAATATACCCCAATGTTACTGTCATTCAGTCAACATTTCAGATAAGAGGCATGCATACATTAATTCGAGATCGGGACATTTCAAAGCATGATTTTGTGTTCTATTCAGACCGACTTATTCGTCTGGTTGTGGAGCACGGCCTTGGCCATTTGCCATTTACTGAAAAACAAGTGGTCACTCCAACGGCATCTGTATACACTGGGGTTGATTTCTGCAAAAAACTATGTGGGGTATCCATCGTTCGAAGTGGTGAAAGCATGGAAAATGCATTACGTGCATGTTGCAAAGGGATAAAAATTGGGAAGATTCTGATTCACCGTGAGGGAGATAATGGGAAACAGCTGATATATGAGAAACTACCCAATGATATATCAGAGCGACACGTCCTACTCCTAGATCCTGTTCTCGCTACTGGCAACTCAGCTAATCAAGCAATTGATCTACTCGTACAGAAGGGAGTTCCAGAATCGCACATCATATTCCTCAACTTGATCTCTGCTCCCGAGGGAATTCACTGTGTTTGCAAACGATTCCCATCCTTGAAAATTGTCACTTCGGAGATCGATGCTGGATTGAACGAAGAGTATCGTGTCATACCCGGTATGGGTGAATTTGGCGATCGTTACTTCGGAACTGATGATTAA 1449 44.79 MPEETMPIDYVMEAASGPHFSGLRLDGRLSSPPSSSTSPPTHRYSLSASSAPADANSPKQPFVIGVSGGTASGKTTVCDMIIQQLHDHRVVLINQDSFYRGLTAEELECVHEYNFDHPDSFDTEQLVDCVQKLKSGQSYHVPIYDFKTHQRCVDSFRQVNASNVIILEGILVFHDQRVRNLMNMKIFVDTDADVRLARRIRRDTVERGRDINSVLEQYAKFVKPAFDDFVLPSKKYADVIIPRGGDNHVAVDLIVQHIHTKLGQHDLCKIYPNVTVIQSTFQIRGMHTLIRDRDISKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVVTPTASVYTGVDFCKKLCGVSIVRSGESMENALRACCKGIKIGKILIHREGDNGKQLIYEKLPNDISERHVLLLDPVLATGNSANQAIDLLVQKGVPESHIIFLNLISAPEGIHCVCKRFPSLKIVTSEIDAGLNEEYRVIPGMGEFGDRYFGTDD 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11810287 11817130 + Hsped.02g09730.1 Hepe02g0973 562474

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0973 482 MobiDBLite consensus disorder prediction 22 60 - -
Hepe02g0973 482 Pfam Phosphoribulokinase / Uridine kinase family 63 249 IPR006083 GO:0005524(InterPro)|GO:0016301(InterPro)
Hepe02g0973 482 CDD UMPK 63 261 IPR000764 -
Hepe02g0973 482 SUPERFAMILY PRTase-like 264 481 IPR029057 -
Hepe02g0973 482 Pfam Uracil phosphoribosyltransferase 279 480 - -
Hepe02g0973 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 254 IPR027417 -
Hepe02g0973 482 PRINTS Uridine kinase signature 207 218 - -
Hepe02g0973 482 PRINTS Uridine kinase signature 193 203 - -
Hepe02g0973 482 PRINTS Uridine kinase signature 229 242 - -
Hepe02g0973 482 PRINTS Uridine kinase signature 61 78 - -
Hepe02g0973 482 PRINTS Uridine kinase signature 136 151 - -
Hepe02g0973 482 PRINTS Uridine kinase signature 91 102 - -
Hepe02g0973 482 FunFam Uridine kinase 58 264 - -
Hepe02g0973 482 FunFam Uridine kinase 265 480 - -
Hepe02g0973 482 NCBIfam uridine kinase 60 261 IPR000764 -
Hepe02g0973 482 PANTHER URIDINE KINASE 56 415 - GO:0005737(PANTHER)|GO:0009507(PANTHER)
Hepe02g0973 482 MobiDBLite consensus disorder prediction 28 56 - -
Hepe02g0973 482 Gene3D - 265 480 IPR029057 -
Hepe02g0973 482 CDD PRTases_typeI 338 453 IPR000836 -
Hepe02g0973 482 Gene3D - 57 264 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0973 K00876 - - csv:101207261 905.205
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0973 Hepe-Chr2:11810287 Hepe10g1913 Hepe-Chr10:55950207 1.35e-256 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g1657 . 30 180 PRT Gene Family AT1G80050 75.5 5.0e-62 234.2
Hepe10g0243 . 33 175 PRT Gene Family AT1G80050 79.0 3.4e-58 221.5
Hepe08g1328 . 103 252 PRT Gene Family AT1G80050 69.3 3.5e-55 211.5
Hepe06g1149 . 30 165 PRT Gene Family AT1G80050 76.5 4.6e-55 211.1
Hepe10g0243 . 1 148 PRT Gene Family AT5G11160 81.8 9.6e-64 240.0
Hepe06g1657 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Hepe08g1328 . 81 218 PRT Gene Family AT5G11160 71.7 1.2e-53 206.5
Hepe06g1149 . 8 145 PRT Gene Family AT5G11160 73.2 3.4e-53 204.9
Hepe08g1328 . 74 255 PRT Gene Family AT1G27450 83.5 1.7e-82 302.4
Hepe06g1657 . 7 180 PRT Gene Family AT1G27450 74.1 2.1e-72 268.9
Hepe06g1149 . 7 165 PRT Gene Family AT1G27450 76.1 2.7e-67 251.9
Hepe10g0243 . 11 168 PRT Gene Family AT1G27450 72.8 8.9e-63 236.9
Hepe08g0964 . 76 554 PRT Gene Family AT2G16570 85.7 2.1e-240 828.6
Hepe08g0964 . 76 554 PRT Gene Family AT4G34740 86.3 5.0e-242 833.9
Hepe08g0964 . 27 527 PRT Gene Family AT4G38880 69.8 2.8e-194 675.2
Hepe08g1328 . 74 255 PRT Gene Family AT1G27450 83.5 1.7e-82 302.4
Hepe06g1657 . 7 180 PRT Gene Family AT1G27450 74.1 2.1e-72 268.9
Hepe06g1149 . 7 165 PRT Gene Family AT1G27450 76.1 2.7e-67 251.9
Hepe10g0243 . 11 168 PRT Gene Family AT1G27450 72.8 8.9e-63 236.9
Hepe06g1657 . 30 180 PRT Gene Family AT1G80050 75.5 5.0e-62 234.2
Hepe10g0243 . 33 175 PRT Gene Family AT1G80050 79.0 3.4e-58 221.5
Hepe08g1328 . 103 252 PRT Gene Family AT1G80050 69.3 3.5e-55 211.5
Hepe06g1149 . 30 165 PRT Gene Family AT1G80050 76.5 4.6e-55 211.1
Hepe06g1657 . 6 104 PRT Gene Family AT4G22570 82.8 5.3e-44 173.7
Hepe06g1149 . 5 97 PRT Gene Family AT4G22570 84.9 1.5e-43 172.2
Hepe08g1328 . 78 170 PRT Gene Family AT4G22570 80.6 1.8e-39 158.7
Hepe10g0243 . 11 100 PRT Gene Family AT4G22570 78.9 2.2e-37 151.8
Hepe06g1657 . 1 96 PRT Gene Family AT4G12440 84.4 1.1e-40 162.5
Hepe06g1149 . 1 96 PRT Gene Family AT4G12440 82.3 2.5e-40 161.4
Hepe08g1328 . 74 169 PRT Gene Family AT4G12440 78.1 2.6e-37 151.4
Hepe10g0243 . 4 99 PRT Gene Family AT4G12440 78.1 3.4e-37 151.0
Hepe10g0243 . 1 148 PRT Gene Family AT5G11160 81.8 9.6e-64 240.0
Hepe06g1657 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Hepe08g1328 . 81 218 PRT Gene Family AT5G11160 71.7 1.2e-53 206.5
Hepe06g1149 . 8 145 PRT Gene Family AT5G11160 73.2 3.4e-53 204.9
Hepe02g2821 . 1 186 PRT Gene Family AT1G71750 67.0 1.9e-71 265.8
Hepe10g1913 . 13 467 PRT Gene Family AT1G55810 85.3 3.7e-227 784.3
Hepe02g0973 . 19 482 PRT Gene Family AT1G55810 73.3 6.5e-200 693.7
Hepe10g1913 . 64 480 PRT Gene Family AT3G27440 74.4 1.8e-183 639.0
Hepe02g0973 . 80 482 PRT Gene Family AT3G27440 74.7 2.6e-179 625.2
Hepe02g0973 . 1 482 PRT Gene Family AT3G27190 86.3 1.3e-246 849.0
Hepe10g1913 . 3 466 PRT Gene Family AT3G27190 73.7 2.0e-207 718.8
Hepe04g0824 . 3 285 PRT Gene Family AT3G53900 67.2 1.4e-105 379.8
Hepe10g1913 . 1 467 PRT Gene Family AT4G26510 84.3 2.7e-233 804.7
Hepe02g0973 . 11 482 PRT Gene Family AT4G26510 75.4 1.7e-211 732.3
Hepe02g0973 . 1 482 PRT Gene Family AT5G40870 85.9 5.0e-246 847.0
Hepe10g1913 . 3 469 PRT Gene Family AT5G40870 73.0 5.0e-206 714.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002319 3 2 2 1 2 1 2 1 1 1 1 1 3 2 2 4 1 5 2 1 2 2 1 1 1 1 1 5 3 6 61