Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0980 ATGCGGATGAGTTGTAATGGTTGCAGAGTTCTTCGCAAAGGTTGCAGTGAAAATTGCAGTATTCGACCTTGTTTGCAGTGGATTAAGACTCCTGATTCCCAGGCTAATGCTACTGTTTTTCTCGCCAAGTTCTACGGCCGTGCTGGACTTATGAATCTCATCAACGCCGGTCCTGACCATCTCCGACCTGCCATTTTTAGATCTCTTCTGTATGAGGCTTGTGGCCGGATTGTCAATCCGATTTACGGATCGGTTGGATTGTTGTGGTCTGGTAGTTGGCAACTCTGTCAGGCGGCTGTTGAGGCGGTGCTTAAAGGCGCTCCGATCACGCCGATTAACTCTGAGACGGCCACCACCGGCGATGGACCACCGTTGAAGGCTTACGACATTCGTCATGTTTCCAAGGATGAAAACTCCGCTGCCTCCAACGACGGTGGGCCGATCCGACGAGTCAAGACTCGCTGCCGGTTCAAGCGCTCCGCCGTCAAGACGAAATCACCGAGTAAAGAAGACTCCACTCGCCGACTTTCATCCTCCGCCGAGTTCAATCGGTCGTCGAGTGGTGAGTCGTCGCTGAGTCACCAATCCGACTCGCCGCATCTCGAGAACGAGAGCAAAGAAACCGAGAGCATGGCGGAGGTTTCTCCTCCTCTTCCTCCTCCTCCTCCACCGCCGGTTTTGTTCCGATCGGAAGCCACTTCCGTACCAAAACCCACGAACGGCGGCGGCGGAGTGGCGGCGATTCCGGAAAGTGAAATAGCTCTAGAACTAACCCTGGGGATGGAGCCGGTGTCACGTGCACAGCAGGTGATTCCAATGAAGAAGCGAAAGATAGAGGGCGACGGTGGGTTCAGGCCCAATAAGGAGGCGTGCAATACAGTTCTGGGCCTGGATTTCGCAGCTTGA 906 54.42 MRMSCNGCRVLRKGCSENCSIRPCLQWIKTPDSQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQAAVEAVLKGAPITPINSETATTGDGPPLKAYDIRHVSKDENSAASNDGGPIRRVKTRCRFKRSAVKTKSPSKEDSTRRLSSSAEFNRSSSGESSLSHQSDSPHLENESKETESMAEVSPPLPPPPPPPVLFRSEATSVPKPTNGGGGVAAIPESEIALELTLGMEPVSRAQQVIPMKKRKIEGDGGFRPNKEACNTVLGLDFAA 301
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 11929986 11931461 - Hsped.02g09800.1 Hepe02g0980 562481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0980 301 MobiDBLite consensus disorder prediction 214 229 - -
Hepe02g0980 301 MobiDBLite consensus disorder prediction 178 198 - -
Hepe02g0980 301 Pfam Lateral organ boundaries (LOB) domain 4 102 IPR004883 -
Hepe02g0980 301 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 261 - GO:0010468(PANTHER)
Hepe02g0980 301 MobiDBLite consensus disorder prediction 134 246 - -
Hepe02g0980 301 MobiDBLite consensus disorder prediction 163 177 - -
Hepe02g0980 301 PIRSF AS2 1 294 IPR017414 -
Hepe02g0980 301 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1189 Hepe-Chr1:77054070 Hepe02g0980 Hepe-Chr2:11929986 5.55e-67 dispersed
Hepe01g1821 Hepe-Chr1:83160114 Hepe02g0980 Hepe-Chr2:11929986 1.83e-47 dispersed
Hepe02g0980 Hepe-Chr2:11929986 Hepe04g1305 Hepe-Chr4:68662327 4.71e-53 dispersed
Hepe02g0980 Hepe-Chr2:11929986 Hepe09g0340 Hepe-Chr9:2984055 6.13e-85 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55005 PF03195 LOB 2.50E-24 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0980 - - - 0.0