Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0993 ATGAAGCGAGATCACACTCACCAGTCTTCAATTTCCGCCGCCGGCAAGGCCAAGATATGGCCGGCGGAGAAGGCGGAGGACGACGACAAGCTTCTAGCCGCTCTCGGCTACAATGTCCGGTCTTCGGACATGGCCGACGTCGCTCTGAAACTCGAACAGCTCGAAATGGTAATGGGTTTATCTGAAGAAGATGGAATTTCTCATCTTTCTTCTAATACAGTTCATTACAATCCTTCCGATGTTTCTTCTTGGGTTCAAAACATGCTCGCTGAACTCAACAGCCCCCTTCAATCCCAACCAATCGACGATCCTGTTCTCGCCATAGCAGAATCGACTTCCTCCTTCGCCGATGACTCTGAGTACGATCTCAGAGCAATTCCGGGTGTTGCTGCTTTCCCCCAAATCGATTCCACAAACCCCAGAAAGCGATTCAAGAAATCCGATTCCGAATCGCTTCCTGTTACTGGTTCTTCTTCGTCGTCTTCTTCCTCGTCGGAGCCGTCGCGCTCGGTGGTTCTGGTGGATTCTGCCGAGACCGGCGTCCGGCTTGTCCACAGCCTCCTCGCCTGCGCCGACGCCGTTGACACCAACAACCTCAACCTCGCCGATGCGTTACTGAAACACATCAGAATCCTCGTGGAAGCTCAAGCCGGCGCTATGAGGAAAGTCGCCGGTTATTTCGCTCAAGCCCTAACTCGCCGGATTTACCGATTTCACCCGCAGAAGGCCTTCGATTATTCATCTTCCTACACCGATCTTCTCCAAATGCATTTCTACGGATCTTGCCCTTATCTGAAATTCGCCCATTTCACCGCCAATCAAGCGATTCTTGAATCTGTTGGCACCGCCGGAACCGTCCACGTCGTGGATTTCAACCTCCAGCAGGGTCTCCAATGGCCGGCGTTGATTCAAGCCCTCGCGCTCCGGCCAGGTGGGCCGCCGGTGTTTCATCTGACTGGAATCGGCCCCCCGCCGGCGGAAAATTCCACCGACGGATTACAGGAAGTGGGTTCGAAATTGGCGCAATTCGCGGATACAATGGGCGTGAAATTCGAATTCCGTGGGTTCTTCTGCAACAATTTGGCCGATCTCGAACCGTCGATGCTCAAATTAGAAACGGAAACCCTCGCCATAAACTCCATTTTCGAGCTCCACCGGCTACTGGGCCATCCGGGCGCGATTGAAAAAGTGTTAACCACAATCAAAGAACTGAACCCCAAAATCGTCACCGTCGTGGAGCAAGTCGCCGACCACAACGGGCCGTCGTTCGTCGACAGATTCACAGAAGCATTACACTATTACTCGAGTTTATTCGATTCGTTAGAAGGGTCGCCGGCAGGGGAAGAGGATGTGGTGAGGTCGGAGGAGTATCTGGGGAGACAAATCTGCAACGTGGTGGCGTGTGAAGGTTCGGAGCGGGTAGAGCGGCACGAGACGGTGGCGCAGTGGCGGAGCCGGATGGGTTCGAGTGGGTTCGAGATGGTTCATCTTGGTTCGAACGCGTTCAAGCAGGCGAGTACTTTGCTGGCTCTGTTCGGCGGTGGAAATGGCTACAGAGTTGAAGAGAATAATGGGAGTTTGACGTTGGGTTGGCACACTCGGCCGCTTTTCGCCACCTCGGCCTGGTCTGTTGGCGGCGGCGAGTTGAGGTGA 1653 54.14 MKRDHTHQSSISAAGKAKIWPAEKAEDDDKLLAALGYNVRSSDMADVALKLEQLEMVMGLSEEDGISHLSSNTVHYNPSDVSSWVQNMLAELNSPLQSQPIDDPVLAIAESTSSFADDSEYDLRAIPGVAAFPQIDSTNPRKRFKKSDSESLPVTGSSSSSSSSSEPSRSVVLVDSAETGVRLVHSLLACADAVDTNNLNLADALLKHIRILVEAQAGAMRKVAGYFAQALTRRIYRFHPQKAFDYSSSYTDLLQMHFYGSCPYLKFAHFTANQAILESVGTAGTVHVVDFNLQQGLQWPALIQALALRPGGPPVFHLTGIGPPPAENSTDGLQEVGSKLAQFADTMGVKFEFRGFFCNNLADLEPSMLKLETETLAINSIFELHRLLGHPGAIEKVLTTIKELNPKIVTVVEQVADHNGPSFVDRFTEALHYYSSLFDSLEGSPAGEEDVVRSEEYLGRQICNVVACEGSERVERHETVAQWRSRMGSSGFEMVHLGSNAFKQASTLLALFGGGNGYRVEENNGSLTLGWHTRPLFATSAWSVGGGELR 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12105253 12107364 - Hsped.02g09930.1 Hepe02g0993 562494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0993 550 ProSiteProfiles GRAS family profile. 174 543 IPR005202 -
Hepe02g0993 550 MobiDBLite consensus disorder prediction 150 169 - -
Hepe02g0993 550 Gene3D - 28 92 IPR038088 -
Hepe02g0993 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 160 542 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009723(PANTHER)|GO:0009737(PANTHER)|GO:0009863(PANTHER)|GO:0009867(PANTHER)|GO:0009938(PANTHER)|GO:0010187(PANTHER)|GO:0042538(PANTHER)|GO:0043565(PANTHER)|GO:2000033(PANTHER)|GO:2000377(PANTHER)
Hepe02g0993 550 Pfam GRAS domain family 183 542 IPR005202 -
Hepe02g0993 550 SMART DELLA_2 29 102 - -
Hepe02g0993 550 FunFam DELLA protein GAI 27 92 - -
Hepe02g0993 550 Pfam Transcriptional regulator DELLA protein N terminal 29 95 IPR021914 -
Hepe02g0993 550 MobiDBLite consensus disorder prediction 137 169 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0993 Hepe-Chr2:12105253 Hepe02g2393 Hepe-Chr2:69235915 2.48e-225 dispersed
Hepe02g0993 Hepe-Chr2:12105253 Hepe04g0646 Hepe-Chr4:59714816 3.44e-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55007 PF03514 GRAS 4.80E-127 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0993 K14494 - csv:101203095 914.45