Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1001 ATGGAGTTCCGGCGAGGAATTCTGATGGTGGTGGTTCTGGGTTTCGCTTTTCTGGCTTCTGTTCGGCCGGATCTGGCCTCCGACAGAGCGGCGCTGGTGGGTTTCCGGGCGGCGATGGGTGGTCGGCCCCGATTAGAGTGGAACCTCTCCGAGTCATCTCCCTGTTCTTGGGCCGGTGTTAGCTGTGATCGGACTGGCGTTTTTGAGCTTCGGCTACCGGCTATGGGGCTTTCCGGTGAACTTCCGGTCGGGCTTGGGAATTTGACGATGTTACAAACTCTGTCTCTGCGGTTTAATGCTCTCTCCGGCCGGATTCCGGCGGATTTTGCGAATCTTCGTGGGTTGAGGAATCTTTACTTGCAGGGGAACTTGTTTTCCGGCGAGATTCCGGCGTTTCTCTTCGATTTTCGGAATCTGGTTCGGTTGAACATGGCGGACAACAAGTTTTCAGGTGAGATTTCATCTGGGTTCAACAATTTGTCCCGTTTGGCTACTCTGTATTTACAGAACAATCAGTTCACTGGATTGGTTCCTGATTTGAATCTCCCTCTTGCCCAATTTAATGTCTCGTTTAATCAATTGAATGGTTCGATTCCCTCGAAGCTCTCTGGTTTTCCGGCGAATGCTTTTGCGGGGAATTTGCTCTGTGGGGCGCCATTGTTGCTCTGTAACTCGACCGCCCCAGAGCCCAGTCGAAAGTCGAAGCTCTCCGGCGGGGCGATTGCTGGAATTGTGATTGGTGGTTTGTTTGTTTTGGTGTTGATTTTGGTTGTTTTGATTCTTGTGTGTCAAAGAAAGAGTAAGGGGAAATCGGGATCGAAAGAGGGGGTTCGGCCCGGTGGCGGTGAGGTTGATGTGCCAGGGGAGAAGACGACGTCGGCAGGGAGTAGCGAAAGTATAAGCATAGATCATTTGACTGTGGGGAAATCGGCGGCGGGGAAGGGCGGCGAGAGGGATAAGAGATTGGTGTTCTTTGGGAATGTGGGGAATGTGTTTGATTTGGAGGATTTGTTGAGGGCGTCCGCAGAGGTTCTCGGGAAGGGAACGTTCGGGACGGCGTATAAGGCGACGTTGGAGATGGGGATGGTCATCGCAGTGAAGCGGTTGAAGGAGATGACGGCGGCGGAGAAGGAATTCAGGGAAAAAATGGAGGAGGTGGGGAGGATGAAGCACGGGAATTTGGTTTCTCTTAGAGCTTATTATTATAGCAGAGAGGAAAAGCTTTTGGTTTATGATTACATGCCAATGGGAAGCTTGTCTGCACTTTTACATGGTAGCAGAGAGTCGGGAAGGAGTCCGTTGAATTGGGAAGCAAGATCCGGCATTGCGCTCGGAGTCGCCCGTGGAATTTATTACCTTCATTCACAAGGCCCTACCATCTCTCATGGCAACATCAAGTCCTCAAACGTTCTCCTCACCCGATCATACGAAGCCTGTGTATCCGACTTCGGCCTCGCACAACTAGCAATGTCCCCCTCAGCTCCAAGTCGTGTCGCTGGGTACCGAGCCCCAGAGATCACCGATTCTCGAAAGGTATCACAAAAGGCAGACATCTATAGTTTTGGAGTGTTGTTACTAGAAGTGCTAACAGGAAAAGCTCCTACCCATTCTATCTTGAATGAGGAAGGTGTGGACCTTCCTAGATGGGTTCAATCTGTGGTTCAAGAGGAATGGACAGCTGAAGTGTTTGATGAAGAACTTCTTAGGTACCAAAATGTTGAGGAGGAGATGGTTCAACTCTTAGAGCTCGGTTTGCAATGCACGCTCCCGTATCCCGACAACCGTCCGGGAATGGAGGAGGTTGTTCGGCGAATCGAAGAACTATGTCGATCGACATCGCAAAAACAGAGTGAGGCAATTGACAATGAGGGAAATAATGGTATTTCTACACAGTTTCATTCACTTAGCTCAGGTGAACCACCATCTGCAGGGTAG 1935 50.54 MEFRRGILMVVVLGFAFLASVRPDLASDRAALVGFRAAMGGRPRLEWNLSESSPCSWAGVSCDRTGVFELRLPAMGLSGELPVGLGNLTMLQTLSLRFNALSGRIPADFANLRGLRNLYLQGNLFSGEIPAFLFDFRNLVRLNMADNKFSGEISSGFNNLSRLATLYLQNNQFTGLVPDLNLPLAQFNVSFNQLNGSIPSKLSGFPANAFAGNLLCGAPLLLCNSTAPEPSRKSKLSGGAIAGIVIGGLFVLVLILVVLILVCQRKSKGKSGSKEGVRPGGGEVDVPGEKTTSAGSSESISIDHLTVGKSAAGKGGERDKRLVFFGNVGNVFDLEDLLRASAEVLGKGTFGTAYKATLEMGMVIAVKRLKEMTAAEKEFREKMEEVGRMKHGNLVSLRAYYYSREEKLLVYDYMPMGSLSALLHGSRESGRSPLNWEARSGIALGVARGIYYLHSQGPTISHGNIKSSNVLLTRSYEACVSDFGLAQLAMSPSAPSRVAGYRAPEITDSRKVSQKADIYSFGVLLLEVLTGKAPTHSILNEEGVDLPRWVQSVVQEEWTAEVFDEELLRYQNVEEEMVQLLELGLQCTLPYPDNRPGMEEVVRRIEELCRSTSQKQSEAIDNEGNNGISTQFHSLSSGEPPSAG 644
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12270237 12272487 - Hsped.02g10010.1 Hepe02g1001 562502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1001 644 FunFam Probable inactive receptor kinase RLK902 25 181 - -
Hepe02g1001 644 PANTHER OS05G0588300 PROTEIN 6 614 IPR050994 -
Hepe02g1001 644 MobiDBLite consensus disorder prediction 269 298 - -
Hepe02g1001 644 Gene3D Ribonuclease Inhibitor 25 220 IPR032675 -
Hepe02g1001 644 SMART LRR_typ_2 88 111 IPR003591 -
Hepe02g1001 644 SMART LRR_typ_2 112 136 IPR003591 -
Hepe02g1001 644 SMART LRR_typ_2 160 183 IPR003591 -
Hepe02g1001 644 Pfam Leucine rich repeat N-terminal domain 26 63 IPR013210 -
Hepe02g1001 644 Pfam Leucine Rich Repeat 91 112 IPR001611 GO:0005515(InterPro)
Hepe02g1001 644 Pfam Leucine Rich Repeat 138 160 IPR001611 GO:0005515(InterPro)
Hepe02g1001 644 Gene3D Transferase(Phosphotransferase) domain 1 414 632 - -
Hepe02g1001 644 SUPERFAMILY L domain-like 47 205 - -
Hepe02g1001 644 ProSiteProfiles Protein kinase domain profile. 339 608 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1001 644 FunFam Probable inactive receptor kinase At1g48480 414 616 - -
Hepe02g1001 644 CDD STKc_IRAK 345 608 - -
Hepe02g1001 644 SUPERFAMILY Protein kinase-like (PK-like) 343 605 IPR011009 -
Hepe02g1001 644 FunFam pollen receptor-like kinase 1 308 413 - -
Hepe02g1001 644 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524(InterPro)
Hepe02g1001 644 Gene3D Phosphorylase Kinase; domain 1 316 413 - -
Hepe02g1001 644 MobiDBLite consensus disorder prediction 613 644 - -
Hepe02g1001 644 Pfam Protein kinase domain 343 603 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1001 Hepe-Chr2:12270237 Hepe02g2407 Hepe-Chr2:69734346 7.88e-163 dispersed
Hepe09g1035 Hepe-Chr9:10714608 Hepe02g1001 Hepe-Chr2:12270237 4.00e-42 dispersed
Hepe02g1001 Hepe-Chr2:12270237 Hepe07g2340 Hepe-Chr7:67769684 4.13e-203 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72547 PF00069 Pkinase 1.40E-36 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1001 - - - 0.0