Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1008 ATGATCTTGTCATGGAGGAAAAACAAACTTGGGTTTCTCCCCAAGTTGAAGAAAGAGCTCCCAGGCCTCGATTCGGGTTCGGAAGTCGTGATTCCTTCGCATTTTTTGTGTCCGATTTCTCTTGATTTGATTAAGGACCCTGTGATTTTGTCCACTGGGATTACTTATGATAGAGAGAGCATCGAGAAGTGGATTGATGGCGGAAATTTTTCATGTCCGGTGACGAAACAGGGTTTGACGAGTTTCGACCTAATCCCTAATCACTCGTTGAGGAGGATGATCCAAGATTGGTGCGTTGCCAATCGTTCTTACGGGATCGAGCGGATTCCGACACCGCGGATTCCGGTCACGCCGTATGAAGTTAACGAGGTTTGTTCGAGAATCGCCGTCGCGACTCAAAGGGGCGATTCGAAGAAGTGCGGTGAATTGGTTGGTAAGATCAGGAATTGGGCAAGGGAGAGCGAGAGGAATCGGAGGTGTATTGTGAATGGAGGAGCCGGCGATGTTTTAGCAGCTTCGTTTGAGCATTTTGCTGGTGTTTCGATTGAGAAACATGTGGGTTTGTTGGAGGAGATGTTGTTGGTTTTGGTGGTTATGTTCCCAATAGCCATTGAAGGCTTATCTAAGCTCGGATCTGCAGATTCTTTGAAATGCTTGGTTTCCTTCTTAACGGGGAAAGATCTTTCTCCCAAACAGAACGCAATTTTTGTTCTGAAAGAACTGCTGTTGGTTGATCAAAGATACGTTGATTCATTGGCAGCCATTGAAGGAGTATCCGAAGCTTTAGTTAGCATCATAAGGGAGCCTCTTTGCCCATCAGCTACAAAATCAGCCCTAACAGCCATTTTCTACATGATTTTACCATCAGAAATCAGTGAGAAAATGGCATTGAAATTTTTGGAACTGGGCTTGGTCTCTCAGCTACTAGATTTTCTGGTAGATGCAGAGAAAAGTCTGTGTGAGAAAGCTTTGGGAATTTTGGATAGCCTATGTGATTTCAAACAAGGAAGGGAGAAGCTTTACCAGAATGCATTAACCATTCCACTCTTAGTCAAGAAGATCCTAAGAGTTTCAGAAGCAGCCACTGAATATTGTCTGTCAATATTGTTGAAGCTTTGTAAGAGTGGAGAGAAGGGTGAAGATGAAGTCAGGGTGGAAGCAGCCCAACTTGGTGCTTTCCAAAAGATATTGGTTCTTTTACAGGTTGGTTGTGGTGGTGACATGAAAGAAAAGGTCACTGATATGTTGAAATTGTTGAATCTGTACAAAGATAGGTTAGATTGTATCGATTCGTCCATGCATTTTAAGTACTTGAAGAAATCATTCTGA 1329 43.34 MILSWRKNKLGFLPKLKKELPGLDSGSEVVIPSHFLCPISLDLIKDPVILSTGITYDRESIEKWIDGGNFSCPVTKQGLTSFDLIPNHSLRRMIQDWCVANRSYGIERIPTPRIPVTPYEVNEVCSRIAVATQRGDSKKCGELVGKIRNWARESERNRRCIVNGGAGDVLAASFEHFAGVSIEKHVGLLEEMLLVLVVMFPIAIEGLSKLGSADSLKCLVSFLTGKDLSPKQNAIFVLKELLLVDQRYVDSLAAIEGVSEALVSIIREPLCPSATKSALTAIFYMILPSEISEKMALKFLELGLVSQLLDFLVDAEKSLCEKALGILDSLCDFKQGREKLYQNALTIPLLVKKILRVSEAATEYCLSILLKLCKSGEKGEDEVRVEAAQLGAFQKILVLLQVGCGGDMKEKVTDMLKLLNLYKDRLDCIDSSMHFKYLKKSF 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12384485 12386166 - Hsped.02g10080.1 Hepe02g1008 562509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1008 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 108 IPR013083 -
Hepe02g1008 442 Gene3D - 122 417 IPR011989 -
Hepe02g1008 442 CDD RING-Ubox_PUB 32 84 IPR045210 -
Hepe02g1008 442 FunFam RING-type E3 ubiquitin transferase 25 107 - -
Hepe02g1008 442 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe02g1008 442 PANTHER WDSAM1 PROTEIN 28 430 IPR045185 GO:0061630(InterPro)
Hepe02g1008 442 SMART Ubox_2 34 97 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe02g1008 442 SUPERFAMILY RING/U-box 27 107 - -
Hepe02g1008 442 Pfam U-box domain 31 102 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Hepe02g1008 442 SUPERFAMILY ARM repeat 216 416 IPR016024 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0606 Hepe-Chr1:67335627 Hepe02g1008 Hepe-Chr2:12384485 2.14e-152 dispersed
Hepe02g1008 Hepe-Chr2:12384485 Hepe05g0444 Hepe-Chr5:5769797 1.07e-51 dispersed
Hepe02g1008 Hepe-Chr2:12384485 Hepe04g0644 Hepe-Chr4:59663734 9.92e-53 transposed
Hepe02g1008 Hepe-Chr2:12384485 Hepe08g0193 Hepe-Chr8:1750951 3.45e-53 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1008 - - - 0.0