Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1016 ATGGAGAATTTGATGGGTCTGCTGAGAATCCATGTGTTCAGAGGTGTTAATCTTGCTGTAAGAGATGTTGTTAGCAGTGATCCTTATGTTATTGTCAAGATGGGCAAACAGAAGTTGAAGACTCGAGTAGTGAAGCAAAATATCAACCCGGAGTGGAATGAAGATCTAACTCTATCGGTCCAAGATCCAAATATTCCCGTCAACGTGCTGGTATACGACAAGGACTTGTTCTCGCTAGACGACAGGATGGGCGATGCGGAGTTCGACGTTCGTCCGTTCATGGAAGCCGTAAAGATGAGACTAAACAACCTCCCAAGTGGAACCATCATAAGAAAGATTCAACCAAGTAGGGATAATTGCCTGTCTGAAGAAAGTTGCATTGTTTGGGCAAATGGACAAGTTATTCAAAAGATGTTTCTAAGGCTAAGAAATGTGGAGTGTGGTGAAGTTGAGTTGCAAATGCAATGGATTGATATTCCTGGTTCAAGGGGATTGTAG 498 42.77 MENLMGLLRIHVFRGVNLAVRDVVSSDPYVIVKMGKQKLKTRVVKQNINPEWNEDLTLSVQDPNIPVNVLVYDKDLFSLDDRMGDAEFDVRPFMEAVKMRLNNLPSGTIIRKIQPSRDNCLSEESCIVWANGQVIQKMFLRLRNVECGEVELQMQWIDIPGSRGL 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 12515958 12517218 + Hsped.02g10160.1 Hepe02g1016 562517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1016 165 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Hepe02g1016 165 Gene3D C2 domain 4 160 IPR035892 -
Hepe02g1016 165 SMART C2_3c 7 102 IPR000008 -
Hepe02g1016 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 109 IPR035892 -
Hepe02g1016 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
Hepe02g1016 165 Pfam C2 domain 6 93 IPR000008 -
Hepe02g1016 165 CDD C2_ArfGAP 6 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1016 Hepe-Chr2:12515958 Hepe09g0393 Hepe-Chr9:3530798 1.24e-83 dispersed
Hepe02g1016 Hepe-Chr2:12515958 Hepe07g2353 Hepe-Chr7:67880684 2.47e-84 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1016 - - - 0.0