Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1055 ATGGATTTTATGATGGAGGGTCGTGGGGGTTATGGCGGTGGCTCAGGTGATGAACAAGAAGCTTCTAACGATCGCAAGGGGAAAAAGAGTTACCATCGCCATAATCCTTACCAGATTCAGCAACTTGAATCATTTTTCAAGGCATGCCCACACCCTGATGAAAATCAGCGGCGCCAGCTGAGTCGAGAGCTTGGTCTTGAGGCCAAACAGATAAAATTTTGGTTTCAAAACAAGAGGACTCAAACAAAGGCTCAGAATGAGCGAGCAGATAACTCTGCGCTTCGCACAGAGAATGAAAAGATTCAATGTGAAAATCTTGCAATTAGAGAAGCGTTGAGGAATGTCATCTGTCCATCCTGTGGAGGTCCACCTTTTGGAGAAGAAGAACGGCAGCGCAATCTCCAAAAGCTGCGCCTTGAAAATGCTCACTTAAAAGACGAGCACGAAAAAGTCTCTAACCTTCTTGCCAAGTACATTGGAAAACCAATATCACAACTTGAATCACTATTGCCTGTTCTTGGATCTTCGCTCGATATATCACCAAGAAGTTCCCTTAGCCAACTAGGTGGAAGTCCTGCAGTTGATCTTATTTCTGATCCTGTAATATTAAATGGAACAGCAACACCCTACCAGTCAAGAGGTGTTAATGATTTGGAAAGTGCACTCATGTTGGAAACTACGGCAACTGCCTTGGAGCAGTTGATCCGACTTTTGAGGATTGATGAGCCTTTGTGGATGAAGACCCTGAACGATGGGAGCTATAATCTTAATCGTGACAGCTACGACAAAACATTTCCTAAACCCAATCGCTCGAAATCTTCTAGTGCTCGTACTGAATCATCTAAAGCTTCAGGAGTGGTGACAATGAGTGCATTGCAATTGGTTGATGTTTTCTTAGATGCGGATAAATGGGCAGATCTTTTTCCAACTATCATAATCAATGCGGAGACATTTCATATTATTGACCCTGGGATGCCTGGAAATCGCAGTGGCGCTTTACAATTGATGTATGAACAAATGCACATCTTTTCGCCCCTCGTGTCTCCTCGGGATTTCTGCTTCATTCGGCATTGTCAGCAGATTGAGCTTGGTGTCTGGGTAATAGTGGATGTTTCCTATGAATTCTTAAAGGATTGTGTCACCTCCGCCCGCTGCTGGAGGCTTCCTTCTGGGTGCATGATTCAAGAAATGCCCAATGGGTGCTCTAAGATTACCTGGGTTGAGCATGTGGAAGTGGATGATAAATCACAAACCCACCGGCTCTATCGGGATCTCGTGTTCGATAATATGGCATATGGAGCCGAACGATGGGTTTTCACTCTCCAAAGGATGTGTGAGAGATTGGCTCACACATTCAGGGACTGTGCCCCTAGCCATGAACTTGGAGGAGTGTTAACTTCTCTTGAAGGTAGAAGGAGCATCATGAAGCTGTCACACAGGATGGTAAAAAACTTTTGTGGTGTATTGAGCATGTCAGGTAAATTAGATTTCCCTCAATTATCCGAAGTGAACAATACTGGTGTTCGAATCTCTGTTCGGGTTAGCTCGGAACTGGGGCAGCCCAGTGGGACAGTCGTTTGTGCCGCTACATCTCTTTGGCTTCCCCTACAACCTGAAAGCATCTTTAATTTCTTCAGGGATGAAAAGGCCAGAGTTCAGTGGGATGTTCTCTCTAATGGAAACCCAGTACATGAAATTGCGCACATCTTAACAGGAGTTCATCCAGGAAACTCGATATCGATAATACGGGTACTTTCCTTTTTGTAA 1767 44.6 MDFMMEGRGGYGGGSGDEQEASNDRKGKKSYHRHNPYQIQQLESFFKACPHPDENQRRQLSRELGLEAKQIKFWFQNKRTQTKAQNERADNSALRTENEKIQCENLAIREALRNVICPSCGGPPFGEEERQRNLQKLRLENAHLKDEHEKVSNLLAKYIGKPISQLESLLPVLGSSLDISPRSSLSQLGGSPAVDLISDPVILNGTATPYQSRGVNDLESALMLETTATALEQLIRLLRIDEPLWMKTLNDGSYNLNRDSYDKTFPKPNRSKSSSARTESSKASGVVTMSALQLVDVFLDADKWADLFPTIIINAETFHIIDPGMPGNRSGALQLMYEQMHIFSPLVSPRDFCFIRHCQQIELGVWVIVDVSYEFLKDCVTSARCWRLPSGCMIQEMPNGCSKITWVEHVEVDDKSQTHRLYRDLVFDNMAYGAERWVFTLQRMCERLAHTFRDCAPSHELGGVLTSLEGRRSIMKLSHRMVKNFCGVLSMSGKLDFPQLSEVNNTGVRISVRVSSELGQPSGTVVCAATSLWLPLQPESIFNFFRDEKARVQWDVLSNGNPVHEIAHILTGVHPGNSISIIRVLSFL 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 13006470 13010525 - Hsped.02g10550.1 Hepe02g1055 562556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1055 588 Gene3D - 14 102 - -
Hepe02g1055 588 FunFam Homeobox-leucine zipper protein HDG1 15 101 - -
Hepe02g1055 588 ProSitePatterns 'Homeobox' domain signature. 60 83 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe02g1055 588 SUPERFAMILY Bet v1-like 221 448 - -
Hepe02g1055 588 SUPERFAMILY Homeodomain-like 15 86 IPR009057 -
Hepe02g1055 588 Gene3D - 229 423 IPR023393 -
Hepe02g1055 588 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 15 584 IPR042160 -
Hepe02g1055 588 Pfam START domain 228 447 IPR002913 GO:0008289(InterPro)
Hepe02g1055 588 SUPERFAMILY Bet v1-like 470 557 - -
Hepe02g1055 588 Coils Coil 84 104 - -
Hepe02g1055 588 ProSiteProfiles 'Homeobox' domain profile. 25 85 IPR001356 GO:0003677(InterPro)
Hepe02g1055 588 CDD homeodomain 28 86 IPR001356 GO:0003677(InterPro)
Hepe02g1055 588 MobiDBLite consensus disorder prediction 260 280 - -
Hepe02g1055 588 MobiDBLite consensus disorder prediction 1 32 - -
Hepe02g1055 588 Pfam Homeodomain 28 83 IPR001356 GO:0003677(InterPro)
Hepe02g1055 588 CDD START_ArGLABRA2_like 221 446 - -
Hepe02g1055 588 SMART HOX_1 27 89 IPR001356 GO:0003677(InterPro)
Hepe02g1055 588 Coils Coil 127 154 - -
Hepe02g1055 588 ProSiteProfiles START domain profile. 216 450 IPR002913 GO:0008289(InterPro)
Hepe02g1055 588 SMART START_1 225 447 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1055 Hepe-Chr2:13006470 Hepe07g2556 Hepe-Chr7:70005103 5.17e-202 dispersed
Hepe02g1055 Hepe-Chr2:13006470 Hepe03g0511 Hepe-Chr3:8847067 3.91e-147 transposed
Hepe02g1055 Hepe-Chr2:13006470 Hepe02g0212 Hepe-Chr2:2108993 9.21e-148 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55012 PF01852 START 4.50E-37 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1055 K09338 - csv:101205899 1069.68