Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1159 ATGGAGGAGAAGAAGAAGGAAGAGATTGTAAAGATGGAGGACACTAGCACAAGCAGCGGCGGCGGAGAAGGCGGTGGCGGCGGTGGCGGCAGTGGGTTTTTGCCATTTTGCGATAATATGATAGGAAATAGTTTGTTCGAATTTTCAGATGGTGAAAAATGGTCTGTTGGGTTCACGGAGCTGCTTGGTCTTAATAATGATGAATTTAAGGATTATTGTTCCGAGGTTTTGAATACTCCGGCCACTCCCAATTCCTCCTCCGTCTCCTCCGCCTCTAGCGACGCCGTTAACGACGACCCACAACAACAACAACACAACCCCAATAAACAATTGAAGGTGAAAAAGAAGAAGGAAAAGAGAGAGAAGGAAGCAAGAGTTGCATTCATGACGAAGAGTGAAGTTGATCATCTAGAAGATGGGTATCGATGGAGAAAGTACGGCCAAAAAGCTGTCAAAAACAGCCCATTTCCTAGGAGCTATTATCGTTGCACCAGTGCAGCCTGTGGTGTAAAGAAGAGAGTTGAACGATCTTTTGCTGATCCAACCATTGTGGTGACCACCTACGAAGGCCAACATACTCACCCGAGCCCCGTCCTCACTCGGTCCGCCCTAGCCATCGCCCTTCCACCACCGCCCTCCACCGATGGAAACATTCCAGCAATGTCTCCTGAGTACTTTCAAAACCCAGCCTTCCTCATCGGAGCAGCCAACGCCGCCGCCGGAATCCTGCAGGAGAAGCGGTTCTGCAACCCAAATCCTACTTTTCTTGGAGACCAATATGGGCTGCTTCAAGATGTTGTTCCTCCCCACATGCTCAAACAAGACTAA 828 49.15 MEEKKKEEIVKMEDTSTSSGGGEGGGGGGGSGFLPFCDNMIGNSLFEFSDGEKWSVGFTELLGLNNDEFKDYCSEVLNTPATPNSSSVSSASSDAVNDDPQQQQHNPNKQLKVKKKKEKREKEARVAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSAACGVKKRVERSFADPTIVVTTYEGQHTHPSPVLTRSALAIALPPPPSTDGNIPAMSPEYFQNPAFLIGAANAAAGILQEKRFCNPNPTFLGDQYGLLQDVVPPHMLKQD 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14423808 14426378 + Hsped.02g11590.1 Hepe02g1159 562660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1159 275 SMART WRKY_cls 137 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1159 275 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 203 IPR044810 GO:0003700(InterPro)
Hepe02g1159 275 Pfam WRKY DNA -binding domain 138 195 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1159 275 FunFam WRKY transcription factor 57 123 197 - -
Hepe02g1159 275 MobiDBLite consensus disorder prediction 1 33 - -
Hepe02g1159 275 MobiDBLite consensus disorder prediction 80 108 - -
Hepe02g1159 275 ProSiteProfiles WRKY domain profile. 132 197 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1159 275 MobiDBLite consensus disorder prediction 80 122 - -
Hepe02g1159 275 Gene3D WRKY domain 121 198 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1159 275 SUPERFAMILY WRKY DNA-binding domain 129 197 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1159 Hepe-Chr2:14423808 Hepe04g1972 Hepe-Chr4:74567774 3.45e-44 dispersed
Hepe02g1153 Hepe-Chr2:14329088 Hepe02g1159 Hepe-Chr2:14423808 1.35e-12 proximal
Hepe02g1159 Hepe-Chr2:14423808 Hepe03g1824 Hepe-Chr3:75216308 2.92e-49 wgd
Hepe02g1159 Hepe-Chr2:14423808 Hepe03g0037 Hepe-Chr3:425163 2.82e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55019 PF03106 WRKY 3.20E-26 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1159 - - - 0.0