Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1180 ATGGAGGCTGGATATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGGTCTATGGACTTGAGGGCTGCTGTTGGGAAGAGGAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACGGTGGAATCTGAAAATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACCGGGGGTTCCTCCAACAGTTCCTCGTCCTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATCGATGATGAGAATCTTAATGATGAAGCTCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATGGTCGAGAGAGAAGCAGGGAATTGGGAAGGAACCAGCGGGAAGAAGACTAAATTGTCGGGGGGAAATTCGAATCGGGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGTAATGCAAAGGATTATCACAGACGACATAAAGTCTGTGAAACACATTCTAAGGCGAGTAATGCGCTTGTCGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGGAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGCGCAGGAGAAAAATTAATCCAGATAATGTTGTTAATGGAAATTCCCCACCCGATGAGCAGACTAGTAGTTACTTACTGTTAACTCTATTGCGAATACTTGCAAATTTGCACTCCAATGGATCAAATCAATCCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGCCTTGCCTGTCAATCTAGTGAGCATGTGGGAAAAAACCTATCTGGGATTCTGCATGATCCCCAGAATTTGCTGAACAACGGGGCATTAATTGGTAAAGCAGATCTAGTTTCTACTTTTCTCTCAAAGGGTCCTCAGGTACCTTTGAGACCTTCTAAACAACATGACACGATACCAATATCTGAGACACCAGTACAAGTCATTGGTAGGGGTGGAGATACACCAGCCAGATCTTCTATAAAACCAAGCACTTCGAACAGCCCTCCCGCTTATTCAGAAATCAGGGACAGTACCATTGGGCAATGCAAAGTGATTAACTTTGATTTGAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGACATCGAAAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATATCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGTATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCATGTGTTGCGAGCTCAGGTTCTCGATTGGTTATCACACAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGTCAGACTGAGGCTTCATGGGACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTTCGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAATAAGAATTACTGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTATATCTAAGAAGGCTATATTTTCAGTTAAAGGAATAAACTTGACCCGACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAAATCAGGAAGCTTCAGATGAGTCAACAGAAAGTGGTGAGAACTTGAAGGCGCAAGATGACAGCCAATGCGTTACCTTTTCTTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAGATCTGCACACTTCAGAGCACTTTAGAATTTACTGAAATGTGCTCAAATTCCGGGGACACTGCAGAGCTGGAAGGAAGGAGTAATGCAATGGAGTTTATTCACGAAATTGGTTGGCTGTTTCATAGGAATCAATTGAAGTCTAGATTAGGTCACTTGGATCCGAATGAAAATCTCTTTTCACTGCAACGGTTCAAGTGGCTCATAGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCTCGATGGGACCGTGGATGCAGGTGATCACGCGTCTTTGAATCTCACATTGACGGATATGGGACTTCTTCACCGAGCAGTGAGAAAAAACAGTAGGTCACTGGTGGAGCTCCTTTTGAGATATCCTTCCAAAGTGAAAGATACATCAAGTTTTGAAGACAATGCATCCATTGATAAAGGGACCATTAGCTTCCTGTTTAGACCCGATGTCATAGGCCCGGCTGGTTTGACCCCTCTACACATTGCAGCTGGTAAAGATGATTCTGAGGATGTTCTTGATGCATTAACTAATGACCCGGGAATGGTGGGAGTGGAGGCTTGGAAGAGTGCTCGAGACAGCACAGGCTCGACACCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCGTATATTCGCCTCGTCCAGAGGAAAATCAACAAGAGATCTGCAACTGGGCATGTGGTGCTTGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAATCAGAAGCAGAACACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGGACAGAACTAAAACCTACTCAGCAGAATTGCAAGCTTTGTGTCAGGAAACCTCTCCGTTGTGGAACGTTGTCTGGCGCGTCTTTGGTCTACAGGCCCGCAATGCTTTCGATGGTGGCCATTGCTGCTGTCTGTGTGTGCGTGGCGCTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTACATTACGGTACTAGTTAG 3042 44.87 MEAGYGGEACQLYGMGSMDLRAAVGKRSLEWDLNDWKWDGDLFIARPLNTVESENLSRQLFPIVSGIPLTGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIDDENLNDEARTLSLKVGGNGSQMVEREAGNWEGTSGKKTKLSGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQSTDQDLLSHLIRSLACQSSEHVGKNLSGILHDPQNLLNNGALIGKADLVSTFLSKGPQVPLRPSKQHDTIPISETPVQVIGRGGDTPARSSIKPSTSNSPPAYSEIRDSTIGQCKVINFDLNDAYVDSDDGMEDIERQALPVHMGTSSLEYPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEASWDDLCHDLSTSLNRLLDVSDDAFWRTGWVFVRVQHQIAFVYHGQVVVDTSLPLRNKNYCRITSVNPVAVSISKKAIFSVKGINLTRPTTRLLCAIEGKYLNQEASDESTESGENLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCTEICTLQSTLEFTEMCSNSGDTAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLQRFKWLIEFSMDHDWCAVVKKLLDVLLDGTVDAGDHASLNLTLTDMGLLHRAVRKNSRSLVELLLRYPSKVKDTSSFEDNASIDKGTISFLFRPDVIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSATGHVVLDIPSTLSDGSWNQKQNTDLTSSRFEIGRTELKPTQQNCKLCVRKPLRCGTLSGASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLHYGTS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14714054 14720497 - Hsped.02g11800.1 Hepe02g1180 562681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1180 1013 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677(InterPro)
Hepe02g1180 1013 Pfam SBP domain 155 228 IPR004333 GO:0003677(InterPro)
Hepe02g1180 1013 MobiDBLite consensus disorder prediction 356 373 - -
Hepe02g1180 1013 SUPERFAMILY Ankyrin repeat 781 895 IPR036770 -
Hepe02g1180 1013 Gene3D - 146 216 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe02g1180 1013 Gene3D - 732 902 IPR036770 -
Hepe02g1180 1013 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe02g1180 1013 MobiDBLite consensus disorder prediction 344 374 - -
Hepe02g1180 1013 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
Hepe02g1180 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1008 IPR044817 GO:0003677(InterPro)
Hepe02g1180 1013 MobiDBLite consensus disorder prediction 421 454 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1395 Hepe-Chr1:79192471 Hepe02g1180 Hepe-Chr2:14714054 1.50e-31 dispersed
Hepe02g0126 Hepe-Chr2:1439452 Hepe02g1180 Hepe-Chr2:14714054 2.34e-31 dispersed
Hepe02g1180 Hepe-Chr2:14714054 Hepe03g0647 Hepe-Chr3:13624522 1.62e-31 dispersed
Hepe01g2381 Hepe-Chr1:88189701 Hepe02g1180 Hepe-Chr2:14714054 1.14e-127 transposed
Hepe02g1180 Hepe-Chr2:14714054 Hepe07g1902 Hepe-Chr7:62691633 1.50e-31 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55021 PF03110 SBP 7.50E-30 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1180 - - - 0.0