Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1180 ATGGAGGCTGGATATGGAGGTGAAGCTTGTCAATTGTATGGTATGGGGTCTATGGACTTGAGGGCTGCTGTTGGGAAGAGGAGTCTTGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTGAATACGGTGGAATCTGAAAATTTGAGCAGGCAGCTTTTTCCAATCGTCTCTGGGATTCCCCTGACCGGGGGTTCCTCCAACAGTTCCTCGTCCTGCTCTGATGAAGCTAATATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAGAAGAGAAGGAGGGTTACTGTTATCGATGATGAGAATCTTAATGATGAAGCTCGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATGGTCGAGAGAGAAGCAGGGAATTGGGAAGGAACCAGCGGGAAGAAGACTAAATTGTCGGGGGGAAATTCGAATCGGGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGTAATGCAAAGGATTATCACAGACGACATAAAGTCTGTGAAACACATTCTAAGGCGAGTAATGCGCTTGTCGCTAATGTTATGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGGAGTTGTCGTAGGCGTTTGGCTGGCCATAATAAGCGCAGGAGAAAAATTAATCCAGATAATGTTGTTAATGGAAATTCCCCACCCGATGAGCAGACTAGTAGTTACTTACTGTTAACTCTATTGCGAATACTTGCAAATTTGCACTCCAATGGATCAAATCAATCCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGCCTTGCCTGTCAATCTAGTGAGCATGTGGGAAAAAACCTATCTGGGATTCTGCATGATCCCCAGAATTTGCTGAACAACGGGGCATTAATTGGTAAAGCAGATCTAGTTTCTACTTTTCTCTCAAAGGGTCCTCAGGTACCTTTGAGACCTTCTAAACAACATGACACGATACCAATATCTGAGACACCAGTACAAGTCATTGGTAGGGGTGGAGATACACCAGCCAGATCTTCTATAAAACCAAGCACTTCGAACAGCCCTCCCGCTTATTCAGAAATCAGGGACAGTACCATTGGGCAATGCAAAGTGATTAACTTTGATTTGAATGATGCTTATGTTGACTCAGACGATGGCATGGAAGACATCGAAAGACAAGCACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATATCCTTCTTGGGTGCAACAAGACTCTCATCAGTCAAGCCCCCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCTAGCTCTGCTGGAGAAGCTCAGAGCCGCACAGATCGTATCATTTTGAAATTGTTTGGGAAAGCACCAAATGATTTTCCTCATGTGTTGCGAGCTCAGGTTCTCGATTGGTTATCACACAGTCCCACAGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAATATACCTACGTCAGACTGAGGCTTCATGGGACGATCTTTGCCATGACCTCAGTACCAGTTTGAATAGGCTTCTTGATGTTTCGGATGATGCTTTCTGGAGAACTGGATGGGTTTTCGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCATGGTCAGGTTGTAGTTGACACATCCTTGCCTCTTAGAAATAAGAATTACTGTAGAATCACAAGTGTAAACCCAGTTGCCGTTTCTATATCTAAGAAGGCTATATTTTCAGTTAAAGGAATAAACTTGACCCGACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAAATCAGGAAGCTTCAGATGAGTCAACAGAAAGTGGTGAGAACTTGAAGGCGCAAGATGACAGCCAATGCGTTACCTTTTCTTGCTCTATTCCTGTCGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGTTCCTTTCCTTTTATAGTTGCAGAGGAGGATGTTTGTACAGAGATCTGCACACTTCAGAGCACTTTAGAATTTACTGAAATGTGCTCAAATTCCGGGGACACTGCAGAGCTGGAAGGAAGGAGTAATGCAATGGAGTTTATTCACGAAATTGGTTGGCTGTTTCATAGGAATCAATTGAAGTCTAGATTAGGTCACTTGGATCCGAATGAAAATCTCTTTTCACTGCAACGGTTCAAGTGGCTCATAGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATGTTCTTCTCGATGGGACCGTGGATGCAGGTGATCACGCGTCTTTGAATCTCACATTGACGGATATGGGACTTCTTCACCGAGCAGTGAGAAAAAACAGTAGGTCACTGGTGGAGCTCCTTTTGAGATATCCTTCCAAAGTGAAAGATACATCAAGTTTTGAAGACAATGCATCCATTGATAAAGGGACCATTAGCTTCCTGTTTAGACCCGATGTCATAGGCCCGGCTGGTTTGACCCCTCTACACATTGCAGCTGGTAAAGATGATTCTGAGGATGTTCTTGATGCATTAACTAATGACCCGGGAATGGTGGGAGTGGAGGCTTGGAAGAGTGCTCGAGACAGCACAGGCTCGACACCTGAGGATTATGCCCGTTTGCGTGGCCATTACTCGTATATTCGCCTCGTCCAGAGGAAAATCAACAAGAGATCTGCAACTGGGCATGTGGTGCTTGACATTCCTAGTACTCTCTCAGATGGTAGCTGGAATCAGAAGCAGAACACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGGACAGAACTAAAACCTACTCAGCAGAATTGCAAGCTTTGTGTCAGGAAACCTCTCCGTTGTGGAACGTTGTCTGGCGCGTCTTTGGTCTACAGGCCCGCAATGCTTTCGATGGTGGCCATTGCTGCTGTCTGTGTGTGCGTGGCGCTCCTATTCAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGCCCCTTCCGATGGGAACTATTACATTACGGTACTAGTTAG 3042 44.87 MEAGYGGEACQLYGMGSMDLRAAVGKRSLEWDLNDWKWDGDLFIARPLNTVESENLSRQLFPIVSGIPLTGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIDDENLNDEARTLSLKVGGNGSQMVEREAGNWEGTSGKKTKLSGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQSTDQDLLSHLIRSLACQSSEHVGKNLSGILHDPQNLLNNGALIGKADLVSTFLSKGPQVPLRPSKQHDTIPISETPVQVIGRGGDTPARSSIKPSTSNSPPAYSEIRDSTIGQCKVINFDLNDAYVDSDDGMEDIERQALPVHMGTSSLEYPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTIYLRQTEASWDDLCHDLSTSLNRLLDVSDDAFWRTGWVFVRVQHQIAFVYHGQVVVDTSLPLRNKNYCRITSVNPVAVSISKKAIFSVKGINLTRPTTRLLCAIEGKYLNQEASDESTESGENLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCTEICTLQSTLEFTEMCSNSGDTAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLQRFKWLIEFSMDHDWCAVVKKLLDVLLDGTVDAGDHASLNLTLTDMGLLHRAVRKNSRSLVELLLRYPSKVKDTSSFEDNASIDKGTISFLFRPDVIGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGVEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSATGHVVLDIPSTLSDGSWNQKQNTDLTSSRFEIGRTELKPTQQNCKLCVRKPLRCGTLSGASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLHYGTS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 14714054 14720497 - Hsped.02g11800.1 Hepe02g1180 562681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1180 1013 ProSiteProfiles Zinc finger SBP-type profile. 152 229 IPR004333 GO:0003677(InterPro)
Hepe02g1180 1013 Pfam SBP domain 155 228 IPR004333 GO:0003677(InterPro)
Hepe02g1180 1013 MobiDBLite consensus disorder prediction 356 373 - -
Hepe02g1180 1013 SUPERFAMILY Ankyrin repeat 781 895 IPR036770 -
Hepe02g1180 1013 Gene3D - 146 216 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe02g1180 1013 Gene3D - 732 902 IPR036770 -
Hepe02g1180 1013 SUPERFAMILY SBT domain 153 234 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe02g1180 1013 MobiDBLite consensus disorder prediction 344 374 - -
Hepe02g1180 1013 FunFam Squamosa promoter-binding-like protein 14 146 216 - -
Hepe02g1180 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 1008 IPR044817 GO:0003677(InterPro)
Hepe02g1180 1013 MobiDBLite consensus disorder prediction 421 454 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1180 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1395 Hepe-Chr1:79192471 Hepe02g1180 Hepe-Chr2:14714054 1.50e-31 dispersed
Hepe02g0126 Hepe-Chr2:1439452 Hepe02g1180 Hepe-Chr2:14714054 2.34e-31 dispersed
Hepe02g1180 Hepe-Chr2:14714054 Hepe03g0647 Hepe-Chr3:13624522 1.62e-31 dispersed
Hepe01g2381 Hepe-Chr1:88189701 Hepe02g1180 Hepe-Chr2:14714054 1.14e-127 transposed
Hepe02g1180 Hepe-Chr2:14714054 Hepe07g1902 Hepe-Chr7:62691633 1.50e-31 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1180 . 180 1013 SBP-box Gene Family AT2G47070 55.7 3.3e-241 831.6
Hepe02g1180 . 25 1013 SBP-box Gene Family AT3G60030 54.9 9.0e-281 963.4
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50570 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50570 67.0 7.3e-37 151.8
Hepe05g0545 . 5 177 SBP-box Gene Family AT3G57920 52.9 2.2e-38 156.8
Hepe07g2446 . 121 279 SBP-box Gene Family AT1G69170 53.5 3.2e-41 166.4
Hepe05g0545 . 10 176 SBP-box Gene Family AT2G42200 55.6 3.0e-41 166.4
Hepe02g1180 . 180 1013 SBP-box Gene Family AT2G47070 55.7 3.3e-241 831.6
Hepe07g2446 . 121 279 SBP-box Gene Family AT1G69170 53.5 3.2e-41 166.4
Hepe05g0545 . 10 176 SBP-box Gene Family AT2G42200 55.6 3.0e-41 166.4
Hepe02g1180 . 25 1013 SBP-box Gene Family AT3G60030 54.9 9.0e-281 963.4
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50570 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50570 67.0 7.3e-37 151.8
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50670 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50670 67.0 7.3e-37 151.8
Hepe05g0545 . 5 177 SBP-box Gene Family AT3G57920 52.9 2.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55021 PF03110 SBP 7.50E-30 No_clan Hepe TF