Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1211 ATGGGTCGAGGGAAGATTGAAATTAAACGGATTGAGAATGCCAATAGCAGGCAAGTTACATTTTCTAAGAGACGAGCTGGGTTGCTTAAGAAGGCTCAGGAACTTGCTATTCTTTGTGATGCTGAAGTTGCTGTTATCATTTTCTCTAATACTGGCAAGCTTTTTGAGTTTTCCAGTTCTGGCATGAAGCATACTCTTTCAAGATACAACAGATGTGTAGAATCTTCAGAGGCAGCAGTAGACGGGCACAAGGCCGAGAAGCAAGAGCATGAGGAGGTAGACAATCTAAGAGACGAAATAACTGCTCTGCAAATGAAACAATTACAGCTATTGGGAAAGGATCTCACTGGCTTAGGGTTCAAAGAATTGCAGAACCTGGAGCAACAACTAAATGAAGGGCTATTACTGGTGAAAGAGAAGAAGGAACAGTTACTGATGGAGCAACTAGAGCAATCAAGGGTACAGGAACAACGAGCAATGCTAGAGAACGAAACACTGCGGAGACAGGTCAGCGAGCTTCGATGTCTGTTTCCGCCAGTTGAGTGTCCGCTTCCTGCTTATCTTGACTACTGCTCCCTAGAACAGAAGAACATTTGCATTAGAAGCCCTGAAATGGCCTGCAACTCTGAAATTGAAAGAGGAGATTCAGACACCACCTTGCACTTGGGGCTGCCATCTCATGTTTATTGCAAGAGAAAGGAGTCTGCGAGAGATACGCATTCAAATGATTCAGGGAGCCAAATGGGTCTACTCTGA 756 44.44 MGRGKIEIKRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSSSGMKHTLSRYNRCVESSEAAVDGHKAEKQEHEEVDNLRDEITALQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKKEQLLMEQLEQSRVQEQRAMLENETLRRQVSELRCLFPPVECPLPAYLDYCSLEQKNICIRSPEMACNSEIERGDSDTTLHLGLPSHVYCKRKESARDTHSNDSGSQMGLL 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15212649 15216972 + Hsped.02g12110.1 Hepe02g1211 562712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1211 251 Pfam K-box region 82 170 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe02g1211 251 Coils Coil 123 143 - -
Hepe02g1211 251 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe02g1211 251 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Hepe02g1211 251 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 Coils Coil 73 106 - -
Hepe02g1211 251 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 Coils Coil 149 169 - -
Hepe02g1211 251 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 Gene3D - 14 95 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe02g1211 251 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe02g1211 251 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 207 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1211 Hepe-Chr2:15212649 Hepe03g0477 Hepe-Chr3:7313329 5.85e-37 dispersed
Hepe02g1211 Hepe-Chr2:15212649 Hepe04g0412 Hepe-Chr4:53459249 1.78e-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55022 PF01486 K-box 4.60E-18 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1211 - - - 0.0