Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1237 ATGTCGTTGGCTACTCGCATGAGATCCACCATTCCTGTCCTCGGCAAGTTTTTGAGATCCGAATCGTCCTGCACTCCGCTCTTAAGGACTTATGCCGTTACATCAGGGAAAAATGAAGTAAAAGTGAAGGTGCCTATTGCTTTGTTTGGAGGGTCTGGAAACTATGCCTCTGCTTTGTATCTAGCTGCAGTAAAGGCTAATTCTTTAGACAAGGTGGAGTCTGAGCTTTTTAACCTTGTTAAGGCTATTAAGAAAAGTCCTACATTTTCTCAGTTCACAATGGACCTGTCAGTTCCAGCAGAAACTAGAGTTAAGGCTATGAATGAAATATCTGCTGAGGCTAAATTTGCAGACGTTGTAAAGAACTTCTTAGTTGTGCTGGCTGAGAATGGGAGGTTGAGATATGTAGATAGCATAGCAAAGAGATTTTTGGAGTTGACTATGGCTCATAAAGGAGAAGTTAAAGCAGTTGTTACAACTGTTATTCCCATTCCACCACAAGAAGAGAAAGAATTGAAGGAGGCATTGCAAGATATAATTGGACAAGGCAAGAAGGTTAAGCTCGAGCAGAAGATTGATCCCAGCATACTTGGTGGTCTAGTTGTAGAATTTGGCGAGAAGGTATTTGATATGTCTATTAAAACCCGGGCACGTCAAATGGAGAGGTTCTTGCGCCAACCTGTTTCTCTTGATGGCCTCTAG 702 42.17 MSLATRMRSTIPVLGKFLRSESSCTPLLRTYAVTSGKNEVKVKVPIALFGGSGNYASALYLAAVKANSLDKVESELFNLVKAIKKSPTFSQFTMDLSVPAETRVKAMNEISAEAKFADVVKNFLVVLAENGRLRYVDSIAKRFLELTMAHKGEVKAVVTTVIPIPPQEEKELKEALQDIIGQGKKVKLEQKIDPSILGGLVVEFGEKVFDMSIKTRARQMERFLRQPVSLDGL 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15464783 15468086 - Hsped.02g12370.1 Hepe02g1237 562738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1237 233 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 52 153 IPR026015 -
Hepe02g1237 233 PRINTS ATP synthase delta subunit signature 51 70 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Hepe02g1237 233 PRINTS ATP synthase delta subunit signature 184 199 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Hepe02g1237 233 PRINTS ATP synthase delta subunit signature 121 132 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Hepe02g1237 233 PRINTS ATP synthase delta subunit signature 132 146 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Hepe02g1237 233 PRINTS ATP synthase delta subunit signature 199 217 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Hepe02g1237 233 PANTHER ATP SYNTHASE DELTA CHAIN 30 227 IPR000711 GO:0000274(PANTHER)|GO:0015986(InterPro)|GO:0015986(PANTHER)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Hepe02g1237 233 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 186 205 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
Hepe02g1237 233 Hamap ATP synthase subunit delta [atpD]. 47 226 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Hepe02g1237 233 NCBIfam ATP synthase F1 subunit delta 54 223 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Hepe02g1237 233 Gene3D - 51 144 IPR026015 -
Hepe02g1237 233 Pfam ATP synthase delta (OSCP) subunit 53 222 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe06g0163 Hepe-Chr6:6006628 Hepe02g1237 Hepe-Chr2:15464783 9.21e-10 transposed
Hepe02g1237 Hepe-Chr2:15464783 Hepe03g1742 Hepe-Chr3:74302178 1.44e-112 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1237 K02137 - rcu:8272168 332.413