Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1268 ATGGAGTTGGGTTTGAGATTAGGAGATGGTCCTCCATTTGGGTTCCATCACAAACAACCTCCATCAGATTCTTCAGATCCAACAATTGTTGTTTCTCACACAGGCCTTGATTTTTCCCTTGCTTTTGAATCCATTCCTCCACTTCAACAAACCCACAACCACAATAACCACCTCGCTCCCTCGCCGTCGCCTCCGCCGCCGCTTGTTCTTCACCTGGATCTTCTTCCTCGTACTCCTGTCCTCGCCTCTCGTCGATCTTCTGAAACTGATATTTCAGAAGCGGCAGCGGCTGTTTTTACAGATGTAATAAGTACAGCACCGCCTTCAGGGACGGCGGAGGGCGGCGGTGGCGAATCACCAAGAAACCCATTACCATTACATTGGTCGGCGGCGGAAGAGGGAAATAGCGATGAAGATGATCAGAATTTAGGGTCGAGAAAAAAACTGCGACTTTCAAGACAACAATCTGCGTTTCTTGAAGAAAGTTTCAAAGAACACCATACGCTTTACCCTAAGCAAAAGGTAGAACTTGCAAGAAGATTGAATCTTCGTCCTCGTCAAGTGGAAGTCTGGTTTCAAAACAGACGAGCAAGAACAAAGCTGAAGCAAACGGAAGTCGACTGTGAGTACTTGAAAAACTGCTGCCAAACATTAACCCAACAAAACACTAAGCTGAGAAAGGAACTTCAAGATTTGAGAGCTTTGAAAACTACTGATTCTCTCTTCATGCGTTCCCCCGCCACCACTCTCACCATGTGCGCGTCTTGCGAACGCGCCGCCAAAGAACCGCTCACCTCCAAGGCTTCTGGGTTTTCCTTTACAAGAACTGGGTCGTTTCCATTTTCACGACCTCTTCCCTCTACACACAATAATTAG 876 47.15 MELGLRLGDGPPFGFHHKQPPSDSSDPTIVVSHTGLDFSLAFESIPPLQQTHNHNNHLAPSPSPPPPLVLHLDLLPRTPVLASRRSSETDISEAAAAVFTDVISTAPPSGTAEGGGGESPRNPLPLHWSAAEEGNSDEDDQNLGSRKKLRLSRQQSAFLEESFKEHHTLYPKQKVELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQQNTKLRKELQDLRALKTTDSLFMRSPATTLTMCASCERAAKEPLTSKASGFSFTRTGSFPFSRPLPSTHNN 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15816742 15820107 - Hsped.02g12680.1 Hepe02g1268 562769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1268 291 MobiDBLite consensus disorder prediction 1 26 - -
Hepe02g1268 291 Coils Coil 215 235 - -
Hepe02g1268 291 Gene3D - 150 200 - -
Hepe02g1268 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 36 265 IPR050762 -
Hepe02g1268 291 ProSitePatterns 'Homeobox' domain signature. 177 200 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe02g1268 291 ProSiteProfiles 'Homeobox' domain profile. 142 202 IPR001356 GO:0003677(InterPro)
Hepe02g1268 291 Pfam Homeodomain 146 200 IPR001356 GO:0003677(InterPro)
Hepe02g1268 291 CDD homeodomain 146 203 IPR001356 GO:0003677(InterPro)
Hepe02g1268 291 SMART halz 202 245 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1268 291 FunFam Homeobox-leucine zipper protein 18 130 207 - -
Hepe02g1268 291 MobiDBLite consensus disorder prediction 102 148 - -
Hepe02g1268 291 MobiDBLite consensus disorder prediction 49 68 - -
Hepe02g1268 291 Pfam Homeobox associated leucine zipper 202 236 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1268 291 SUPERFAMILY Homeodomain-like 130 203 IPR009057 -
Hepe02g1268 291 SMART HOX_1 144 206 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1268 Hepe-Chr2:15816742 Hepe05g0516 Hepe-Chr5:7049597 5.09e-54 dispersed
Hepe02g1268 Hepe-Chr2:15816742 Hepe03g1708 Hepe-Chr3:74003902 1.08e-59 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55026 PF00046 Homeodomain 7.40E-15 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1268 K09338 - csv:101208907 251.906