Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1279 ATGGCTACGGAAGCTCTTCAGAACGACTTCATTTTCCGGTCGAAGTTGCCGGATATCTACATCCCCAACCACCTTCCTCTGCACTCGTATTGCCTTCACGAAAACACCGCGAAGATCGGCCACCGGACCTGTCTAATCAATGGCGTCACCGGCGAATCCTTCACCTACCACGACGTCGATCTCGCCTCTCGCAAGGTCGCCTCCGGACTGAACAAACTCGGCATTGCACAAGGCGATGTGATCATGCTCCTCCTCCCGAACTCGCCGGAATTCGTCTTCGCCTTCCTCGGTGCCTCGTACCGCGGCGCGATTACCACGGCGGCGAATCCTTTCTTCACGGCAGCGGAAATCACGAAGCAAGCGAAAGGATCGAACGCGAAGTTGATCATCACGCAATCGTCGTATCACGAGAAAGTCAGGGGAATAACAGAGGAATTACCCGACGTTAAAATCATGACAATCGATTCGCCGCCGGACGGTTGTTTATCGTTCGCCGATTTGATTCAAGCCGACGATCGAGAGATTGCGACGGTGGAAATCGATCCGGACGACGTCGTTGCGCTGCCGTATTCTTCCGGAACCACCGGATTTCCGAAAGGAGTGATGCTTACACACAGAGGATTAGTGACGAGTGTTGCTCAGCAAGTCGACGGCGAGAATCCGAATCTTTACTATCGAATTGACGATGTGATTTTGTGCGTTTTGCCGCTTTTTCATATCTATTCGTTGAATTCGGTTCTGCTCTGTGGATTGCGCGCCGGAGCGACGATTCTGATTATGCCTAAATTCGAGATCGGAACGCTTTTGCGATTGGTGGAGAAGTACAGAGTGTCGATTGCGCCGATTGTGCCGCCGATTGTTTTGGCCATTGCGAAGTCGCCGGAGCTCGATAAGTATGATCTGTCGTCGATCAGAGTGATTAAATCCGGCGGAGCTCCGCTCGGGAAGGAGCTTGAAGATACCGTGAGAGCCAAGTTTCCAAAGGCTGTGCTTGGCCAGGGATACGGAATGACAGAGGCGGGTCCAGTGCTAACAATGGGTTTAGCATTTGCAAAGGAACCATTTCCGATGAAACCAGGCGCCTGCGGCACCGTCGTGAGAAACGCCGAGATGAAGATCGTCGACACCGAAAGCGGCGGTTCGTTGCCCCGAAACACGCCGGGAGAGATCTGCATCAGAGGCGATCAAATCATGAAAGGGTATCTGAACAATCCGGAGGCGACGGCCGCCACAATCGACAAGGACGGGTGGTTGCATACTGGCGACATCGGACTCATCGACGACGATGACGAGCTCTTCATCGTGGATCGGTTGAAGGAACTGATCAAATACAAGGGATTTCAAGTCGCTCCGGCGGAACTCGAAGCTCTGTTGCTCACTCATCCGGTGATCTCTGATGCCGCCGTCGTTCCGTAA 1416 53.32 MATEALQNDFIFRSKLPDIYIPNHLPLHSYCLHENTAKIGHRTCLINGVTGESFTYHDVDLASRKVASGLNKLGIAQGDVIMLLLPNSPEFVFAFLGASYRGAITTAANPFFTAAEITKQAKGSNAKLIITQSSYHEKVRGITEELPDVKIMTIDSPPDGCLSFADLIQADDREIATVEIDPDDVVALPYSSGTTGFPKGVMLTHRGLVTSVAQQVDGENPNLYYRIDDVILCVLPLFHIYSLNSVLLCGLRAGATILIMPKFEIGTLLRLVEKYRVSIAPIVPPIVLAIAKSPELDKYDLSSIRVIKSGGAPLGKELEDTVRAKFPKAVLGQGYGMTEAGPVLTMGLAFAKEPFPMKPGACGTVVRNAEMKIVDTESGGSLPRNTPGEICIRGDQIMKGYLNNPEATAATIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLTHPVISDAAVVP 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 15978600 15984235 - Hsped.02g12790.1 Hepe02g1279 562780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1279 471 Gene3D - 439 471 IPR045851 -
Hepe02g1279 471 SUPERFAMILY Acetyl-CoA synthetase-like 17 471 - -
Hepe02g1279 471 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 8 471 - GO:0016405(PANTHER)
Hepe02g1279 471 Gene3D - 5 438 IPR042099 -
Hepe02g1279 471 CDD 4CL 21 471 - -
Hepe02g1279 471 ProSitePatterns Putative AMP-binding domain signature. 188 199 IPR020845 -
Hepe02g1279 471 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 439 - -
Hepe02g1279 471 Pfam AMP-binding enzyme 34 402 IPR000873 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1279 Hepe-Chr2:15978600 Hepe08g2161 Hepe-Chr8:60864587 1.30e-231 dispersed
Hepe06g0701 Hepe-Chr6:51400365 Hepe02g1279 Hepe-Chr2:15978600 4.08e-44 transposed
Hepe10g1034 Hepe-Chr10:41075684 Hepe02g1279 Hepe-Chr2:15978600 3.46e-98 transposed
Hepe02g1279 Hepe-Chr2:15978600 Hepe03g1690 Hepe-Chr3:73737309 4.48e-244 wgd
Hepe02g1279 Hepe-Chr2:15978600 Hepe08g1122 Hepe-Chr8:11201392 2.09e-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1279 K01904 - csv:101215427 818.15