Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1289 ATGGCGGATCTCAAAGAGCGGTTGCTTCCTCCAAAACCTGCATCTGCTATAAATGTTAGGGAGGCAATTAATAATCGACCATCAGCCTCTGGAAGAGTGCCTTTTCAAGGTGTGGATGTTCTAGGGCTGAAGAAGCGAGGTCAGGGACTTAGATCTTGGATCCGGGTAGATTCCTCTGGGAACTCTCAGATTATTGAGGTTGATAAGTTCACCATGATGCGTCGTTGTGATCTACCTGCGCGAGATTTGCGCTTGCTTGATCCTTTGTTTGTTTACCCTTCAACAATTCTTGGTAGAGAGAAGGCTATTGTGGTTAATCTAGAGCAGATTCGATGTATTATAACAGCTGACGAAGTTTTGCTGTTAAATTCCCTTGATAGTTATGTATTGCAGTATGTGGTAGAGCTACAAAGGCGATTGAAAACCACTGGGGTTGATGAGGTTTGGCAGAATGATGGAAATCATGGAGCTGATTTAAATCGAAGAAGGGGAAGTAGGAATTTCGATAATGTATTTGGAAACACCTCTCCTGATTATTTGCCCTTTGAGTTTAGAGCTTTAGAAGTTGCTTTGGAGGCAGCTTGTACATTTCTTGATTCCCAGGCTGCAGAATTAGAAATTGAAGCATACCCGTTACTAGATGAACTTACGTCAAAAATCAGTACATTAAATTTGGAGCGGGTCCGTCGCTTGAAAAGCAGACTTGTTGCCCTGACTCGTAGGGTTCAGAAGGTTAGGGATGAAATAGAGCAGCTCATGGATGATGATGGAGATATGGCAGAAATGTATCTTACCGAGAAGAAAATGAGAATGGAGTCCTTTGCTTATGGCGATCAGTCTGTGACTGGATACAGATCAATTGATGGAGCATCTATTTCTGCTCCTGTTTCTCCTGTATCTTCACCGCCCGAAAGTCGCAAGCTTGAGAAGAGCCTGAGCATTGCTAGGAGCCGGCATGAGAGCATGAGAAGTTCAGAAAGTGCCACTGAAAATATAGAGGAGCTTGAGATGCTTCTTGAAGCATATTTTGTTGTCATTGATAGCACCCTGAACAAGTTAACATCGTTGAAGGAGTACATCGATGATACAGAGGATTTCATCAACATCCAGTTGGATAATGTACGGAATCAGTTGATCCAGTTTGAGCTACTACTCACAACTGCAACATTTGTTGTTGCCATTTTTGGGGTGGTAGCTGGAATTTTTGGCATGAATTTTGAAATACCAATGTTTGGGAATCCTGAAGCATTCAAGTGGGTCCTTGTAATTACAGGAGTAACTGGAATTATCATATTTTCTGCATTTGTTTGGTTTTTCAGATACAAAAGACTGATGCCACTTTAA 1344 41.96 MADLKERLLPPKPASAINVREAINNRPSASGRVPFQGVDVLGLKKRGQGLRSWIRVDSSGNSQIIEVDKFTMMRRCDLPARDLRLLDPLFVYPSTILGREKAIVVNLEQIRCIITADEVLLLNSLDSYVLQYVVELQRRLKTTGVDEVWQNDGNHGADLNRRRGSRNFDNVFGNTSPDYLPFEFRALEVALEAACTFLDSQAAELEIEAYPLLDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIEQLMDDDGDMAEMYLTEKKMRMESFAYGDQSVTGYRSIDGASISAPVSPVSSPPESRKLEKSLSIARSRHESMRSSESATENIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFGNPEAFKWVLVITGVTGIIIFSAFVWFFRYKRLMPL 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16151263 16155650 + Hsped.02g12890.1 Hepe02g1289 562790

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1289 447 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 36 444 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Hepe02g1289 447 Pfam Magnesium transporter MRS2-like 326 375 - -
Hepe02g1289 447 Pfam Magnesium transporter MRS2-like 57 271 - -
Hepe02g1289 447 CDD Mrs2_Mfm1p-like 53 444 IPR039204 -
Hepe02g1289 447 MobiDBLite consensus disorder prediction 294 327 - -
Hepe02g1289 447 FunFam Magnesium transporter MRS2-1 41 124 - -
Hepe02g1289 447 Gene3D - 41 124 - -
Hepe02g1289 447 Coils Coil 228 255 - -
Hepe02g1289 447 FunFam Magnesium transporter MRS2-1 385 445 - -
Hepe02g1289 447 Gene3D Magnesium transport protein CorA, transmembrane region 385 445 - -
Hepe02g1289 447 MobiDBLite consensus disorder prediction 309 327 - -
Hepe02g1289 447 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 384 437 IPR045863 -
Hepe02g1289 447 Gene3D Magnesium transport protein CorA, transmembrane region 125 378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1289 K16075 - - csv:101217419 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0661 Hepe-Chr2:7077724 Hepe02g1289 Hepe-Chr2:16151263 9.83e-102 dispersed
Hepe02g1289 Hepe-Chr2:16151263 Hepe10g0575 Hepe-Chr10:6876209 1.06e-127 dispersed
Hepe02g1289 Hepe-Chr2:16151263 Hepe03g0248 Hepe-Chr3:3170359 6.98e-105 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1289 . 1 447 MRS2 Gene Family AT1G16010 85.0 5.4e-207 717.2
Hepe10g0575 . 6 380 MRS2 Gene Family AT1G16010 52.4 4.4e-108 388.7
Hepe06g1965 . 29 330 MRS2 Gene Family AT1G16010 50.9 8.9e-77 284.6
Hepe03g0248 . 1 367 MRS2 Gene Family AT5G64560 81.8 5.9e-162 567.4
Hepe06g1965 . 1 331 MRS2 Gene Family AT5G64560 67.5 2.1e-111 399.4
Hepe02g0661 . 21 493 MRS2 Gene Family AT3G19640 62.5 2.0e-146 516.2
Hepe07g0517 . 58 405 MRS2 Gene Family AT3G58970 69.2 2.6e-121 432.6
Hepe10g0575 . 3 380 MRS2 Gene Family AT2G03620 68.1 4.3e-137 485.0
Hepe02g1289 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.3e-113 405.2
Hepe03g0248 . 1 329 MRS2 Gene Family AT5G09690 75.6 1.2e-128 456.4
Hepe06g1965 . 1 330 MRS2 Gene Family AT5G09690 64.3 2.3e-106 382.5
Hepe02g1289 . 40 383 MRS2 Gene Family AT5G09690 50.6 1.5e-78 290.0
Hepe03g0248 . 12 289 MRS2 Gene Family AT5G09720 67.0 5.0e-92 334.7
Hepe06g1965 . 35 293 MRS2 Gene Family AT5G09720 58.6 5.2e-73 271.6
Hepe02g1289 . 1 447 MRS2 Gene Family AT1G80900 83.2 9.9e-201 696.4
Hepe10g0575 . 6 380 MRS2 Gene Family AT1G80900 54.0 1.4e-106 383.6
Hepe06g1965 . 29 330 MRS2 Gene Family AT1G80900 50.5 1.0e-72 271.2
Hepe10g0930 . 104 443 MRS2 Gene Family AT5G22830 83.5 8.2e-158 553.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004467 2 3 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 42