Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1294 ATGGATCTTGACAGGAAGGTTTCTGTTAAAGAAGAGACTGGTGCTTTAATGGAGGAATTGAAGAGGGTGAGTGCAGAGAATAAGAAATTGACTGAAATGTTGACTGTTGTGTGTGAAAATTACAACACTTTGAGAGGTCATTTGGTGGAACAAATGAACAAAAATGGGGAAATTAAGGAGATTTCTTCTGTAAAGAAGAGGAAATCTGTAAGTAGTAACAATAATATGGTTGGAATGAATGGGAATTCTGAGAGTAGTTCAACTGATGAAGAGTCTTACAAGAAACCAAAAGAGGAAACCATTAACAAATCTTCTAAAACCACTAGAGTTCAAGTCAAAATTGGAGCTTCTGATTCTAATCTGGTTGTTAAAGATGGATATCAATGGAGGAAATATGGCCAAAAGGTCACTAGAGATAATCCTTGTCCTAGAGCTTATTTCAAGTGCTCTTTTGCTCCTAGCTGCCCTGTGAAGAAGAAGGTTCAAAGAAGTGTAGAAGATCAATCAATTCTGGTAGCCACATACGAAGGCGAACACAACCATCCACACCCATCTCAGATCGAGGCCACATCCAGCGGCGGCGGCGCTCGTAGCTTGAGCGTAACTCCGGCGGCGCTTACGGTGGCTCCGGGATCTTCGTCGGTGCCGGCAATTTCCCACGACATGGCAAAGCCCAAGCCAACCACCGAAGCTAAAACCATCTTCAACCCAAAATTCGACTCGCCGGAACTGCAACAATTTCTCGTCGAACAGATGGCCTCTTCCTTAACGAAAGACCCCAATTTCACGGCGGCGCTCGCGGCGGCGATTTCGGGAAAAATATTCCCACATTAA 834 44.12 MDLDRKVSVKEETGALMEELKRVSAENKKLTEMLTVVCENYNTLRGHLVEQMNKNGEIKEISSVKKRKSVSSNNNMVGMNGNSESSSTDEESYKKPKEETINKSSKTTRVQVKIGASDSNLVVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVEDQSILVATYEGEHNHPHPSQIEATSSGGGARSLSVTPAALTVAPGSSSVPAISHDMAKPKPTTEAKTIFNPKFDSPELQQFLVEQMASSLTKDPNFTAALAAAISGKIFPH 277
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16263377 16265490 - Hsped.02g12940.1 Hepe02g1294 562795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1294 277 ProSiteProfiles WRKY domain profile. 118 184 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1294 277 SUPERFAMILY WRKY DNA-binding domain 121 184 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1294 277 SMART WRKY_cls 123 183 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1294 277 MobiDBLite consensus disorder prediction 62 106 - -
Hepe02g1294 277 MobiDBLite consensus disorder prediction 67 87 - -
Hepe02g1294 277 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 12 271 IPR044810 GO:0003700(InterPro)
Hepe02g1294 277 MobiDBLite consensus disorder prediction 88 104 - -
Hepe02g1294 277 FunFam WRKY transcription factor 40 108 185 - -
Hepe02g1294 277 Gene3D WRKY domain 106 185 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g1294 277 Pfam WRKY DNA -binding domain 124 182 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1294 Hepe-Chr2:16263377 Hepe10g0218 Hepe-Chr10:2209337 2.30e-52 dispersed
Hepe01g1969 Hepe-Chr1:84469385 Hepe02g1294 Hepe-Chr2:16263377 8.40e-60 wgd
Hepe02g1294 Hepe-Chr2:16263377 Hepe08g1152 Hepe-Chr8:11676588 2.51e-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55028 PF03106 WRKY 2.70E-23 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1294 - - - 0.0