Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1295 ATGGCGGGTGAGGCGGCGCCGGCGAGGAATGTTCTCTTTGGGAAATACGAAATGGGACGTCTATTGGGGAAAGGGACCTTCGCGAAGGTCTATTATGGAAGAAACTTGAAGACCCACGAAAGTGTCGCCATTAAAGTGATCCTGAAGGACAGGGTGAAGAAAGAGGGGCTTCTGGAGCAAATCCGGCGAGAAATTTCTGTGATGGGGTTGGTTCGTCATCCCCATATTGTGGAATTGAAAGAAGTAATGGCGACGAAATCGAAGGTGTATTTTGTGATGGAGTACGTTAATGGAGGCGAACTGTTTGTGAAAATGTCTCAACGAGGAAAATTGTCAGAAGATGAAGCTAGAAAGTACTTTCAACAGCTTCTCTCCGCCGTGGACTTTTGCCACAGCCGTGGAGTCTCTCACCGTGATTTGAAGCCTGAAAATCTCCTTCTTGACGAGAACGGTAATTTGAAGGTCTCTGATTTCGGCCTCTCCGCCCTGCCGGAGCAGCTCCGGATCGACGGTTTGCTTCACACACGGTGTGGAACTCCGTCGTATGTGGCGCCGGAGGTACTCCGAAAGAGAGGTTACGACGGCGCCAAGGCGGATATTTGGTCTTGTGGGGTGATTTTGTTTGTGTTGCTTGCTGGGACTTTGCCATTTAGAGCTGATAATGTGATGCAATTGTATAGGAAGATTTTCAAGGCTGAGTTTGAGTTTCCTCCTTGGTTTTCTTCAGAAGCCATGGAAATGGTGTCCAAGATTCTTGTTGTTAATCCGGAGAAAAGGGTTTCAATGGTTGAGATAATGCAGAGTTCTTGGTTTCGAAAGGGCTTCACAAAACCAGTTTCATTCAATGATCAGAAAGATGAGTTCAACAATGAAATCTCTGAATTGGGAAATCCCAAGTTGTTGTTGTCATCTTCTCCTCCTTTTTACAACGCCTTTGAGTTCATTTCCTCAATGTCCTCTGGTTTTGACTTGTCTAGTTTGTTCGAAACCAAGAAGAAACAAGGCTCCATTTTCACTTCAAAGTGCTCTGCTTCAGCCATTATAGCCAAGTTTCAATCTCTGGCGTTGAAGCTGAATTTCAAGGCTACCAAACTGAGGGAGTTCAAGGTGAGGCTGCAGGCCAAGGAGGAGGGGAGGAAAGGGAAGTTGACAATCACGGCAGAGGTTTTCGAGGTGGCGCCGGAGCTGGCAGTCATCGAGTTCTTGAAGTCGGCAGGCGACACTTTGGAGTATAATAAGTTTTGTGAGAAGGATGTGAGGCCTGCATTGAAGGACATAGTTTGGAGCTGGCAAGGAGAGAGTGAGTGCCTATAA 1314 46.88 MAGEAAPARNVLFGKYEMGRLLGKGTFAKVYYGRNLKTHESVAIKVILKDRVKKEGLLEQIRREISVMGLVRHPHIVELKEVMATKSKVYFVMEYVNGGELFVKMSQRGKLSEDEARKYFQQLLSAVDFCHSRGVSHRDLKPENLLLDENGNLKVSDFGLSALPEQLRIDGLLHTRCGTPSYVAPEVLRKRGYDGAKADIWSCGVILFVLLAGTLPFRADNVMQLYRKIFKAEFEFPPWFSSEAMEMVSKILVVNPEKRVSMVEIMQSSWFRKGFTKPVSFNDQKDEFNNEISELGNPKLLLSSSPPFYNAFEFISSMSSGFDLSSLFETKKKQGSIFTSKCSASAIIAKFQSLALKLNFKATKLREFKVRLQAKEEGRKGKLTITAEVFEVAPELAVIEFLKSAGDTLEYNKFCEKDVRPALKDIVWSWQGESECL 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16313192 16315408 + Hsped.02g12950.1 Hepe02g1295 562796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1295 437 ProSiteProfiles Protein kinase domain profile. 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1295 437 FunFam Non-specific serine/threonine protein kinase 304 428 - -
Hepe02g1295 437 FunFam Non-specific serine/threonine protein kinase 7 95 - -
Hepe02g1295 437 ProSiteProfiles NAF domain profile. 304 329 IPR018451 GO:0007165(InterPro)
Hepe02g1295 437 Gene3D Kinase associated domain 1, KA1 305 429 - -
Hepe02g1295 437 FunFam Non-specific serine/threonine protein kinase 9 299 - -
Hepe02g1295 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g1295 437 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Hepe02g1295 437 ProSitePatterns Protein kinases ATP-binding region signature. 22 54 IPR017441 GO:0005524(InterPro)
Hepe02g1295 437 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 10 421 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Hepe02g1295 437 CDD STKc_SnRK3 15 270 - -
Hepe02g1295 437 CDD CIPK_C 310 424 - -
Hepe02g1295 437 Pfam NAF domain 306 364 IPR004041 GO:0007165(InterPro)
Hepe02g1295 437 SMART serkin_6 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1295 437 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1295 437 Gene3D Transferase(Phosphotransferase) domain 1 8 304 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1295 Hepe-Chr2:16313192 Hepe08g2458 Hepe-Chr8:65577880 8.89e-165 dispersed
Hepe02g1295 Hepe-Chr2:16313192 Hepe09g0586 Hepe-Chr9:5510841 3.12e-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72556 PF00069 Pkinase 5.70E-77 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1295 - - - 0.0