Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1311 ATGGCAAGACCTCAACAGCGCTATCGAGGAGTCCGTCAAAGGCATTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTTTACTGAAGACGAGGATATGGCTGGGCACTTTCGAAACGGCCGAAGACGCGGCGAGAGCATACGACGAAGCAGCCAGAATCATGTGTTGCCCTAAATATCTCCCAACCAATCACAATACTCCACCTCACTCCTTACCGGCGCCGCCACCGTCGAACCTTCTAACTCCGACATTGATCCACAAGTTGCAGAGATGTGGAATGGCTTCTCTCCAAATGGCCAAAAAGCAAATCCCCCAAAAAACCCACTTCGCCGACCCAACTCGTTGTCCCGCCACCAAACTCGACGGCGGCTCCGGCGGGGAGGCTCAGGAGGTCCGGCGGCTTGAAGACGACCACGTGGAACAAATGATTCAAGAGTTGCTTGATCTTGGGTCCTTTGAGTTTTGCCCTAATAATAATCATAATATTGGTTCTACAAATAATTAG 504 51.59 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARIMCCPKYLPTNHNTPPHSLPAPPPSNLLTPTLIHKLQRCGMASLQMAKKQIPQKTHFADPTRCPATKLDGGSGGEAQEVRRLEDDHVEQMIQELLDLGSFEFCPNNNHNIGSTNN 167
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16630495 16631578 + Hsped.02g13110.1 Hepe02g1311 562812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1311 167 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 82 IPR050913 -
Hepe02g1311 167 SUPERFAMILY DNA-binding domain 7 55 IPR016177 GO:0003677(InterPro)
Hepe02g1311 167 SMART rav1_2 7 73 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1311 167 Pfam AP2 domain 7 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1311 167 Gene3D AP2/ERF domain 6 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1311 167 ProSiteProfiles AP2/ERF domain profile. 7 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1311 167 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1311 167 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1311 167 FunFam Ethylene-responsive transcription factor 2 6 64 - -
Hepe02g1311 167 CDD AP2 6 55 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1311 167 MobiDBLite consensus disorder prediction 104 128 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1311 Hepe-Chr2:16630495 Hepe10g0227 Hepe-Chr10:2410480 5.99e-50 dispersed
Hepe01g1984 Hepe-Chr1:84647565 Hepe02g1311 Hepe-Chr2:16630495 7.50e-48 wgd
Hepe02g1311 Hepe-Chr2:16630495 Hepe03g1656 Hepe-Chr3:73419690 1.05e-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55030 PF00847 AP2 2.70E-11 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1311 - - - 0.0