Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1339 ATGGCTTTTCGCCTAATGTTTTGCTGTGGAATTGCTTCGGATCGGAAAGAAAGAGGGAAGAAACAGCAAACATGGAGGGTCTTTTCATTGAAGGAATTACACTCAGCCACAAATAATTTCAATTATGATAATAAGCTTGGAGAAGGAGGATTTGGTAGTGTTTACTGGGGTCAGCTTTGGGATGGATCACAAATTGCAGTTAAGAGGTTAAAGGTTTGGAGCAACAAAGCAGACTTGGAATTTTCCGTGGAAGTCGAGATACTCGCCCGAGTAAGGCACAAGAATCTATTGAGTTTACGCGGCTACTGTGCTGAAGGGCAAGAACGTTTGATCGTGTATGACTACATGCCCAATCTAAGTCTACTCTCCCATCTACATGGACATCACTCATCAGAATGCCAACTCGACTGGAAACGCCGAATGAAAATCGCCATTGGGTCTGCTGAGGGAATTGCCTATCTTCACAACCAAGCATCTCCACATATCATTCATCGAGACGTCAAAGCTAGTAATGTTTTGCTAGATCCAGATTTCCAAGCTCGTGTAGCCGACTTTGGATTCGCAAAACTCATCCCCGATGGTGCAACACATGTAACTACAAGAGTGAAGGGCACACTCGGATACCTCGCTCCTGAATACGCTATGTTAGGGAAGGCATCAGAGAGTTGTGACGTATACAGCTTTGGCATTCTCTTGCTCGAGCTCGCCACCGGCAAGAAACCTCTCGAGAAGTTGAGTGCAACAATGAAACGCACAATCACAGACTGGGCGCTACCAATGGTAGTTGAGAAAAAAATTGATGAACTTGCAGACCCGAAGCTAAATGGTGACTACAATGCAGACGAACTAAAGAGAGTCATCCTTGTCGCACTTTGTTGTTCCCATTCACGGCCGGAGAATCGACCCACCATGCTCGAGGTGGTAGAGCTGCTAAAAGGAGAATCAAAAGAGAAGCTAGCTAAATTAGAAGATGATGAGCTGTTCAAGAGCCATCAAGTAGCTGCAGAAACTACAGAAATATCAGCTGGTGAAGATAGCTCAGACTTCATATCAGAAGAAAAGCAAAAGGATTCAAAAGAGGAGGTGAAAGAGAGTTCAACACAAAACCCAAATGAGAATAGTAGCTGA 1128 44.41 MAFRLMFCCGIASDRKERGKKQQTWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSNKADLEFSVEVEILARVRHKNLLSLRGYCAEGQERLIVYDYMPNLSLLSHLHGHHSSECQLDWKRRMKIAIGSAEGIAYLHNQASPHIIHRDVKASNVLLDPDFQARVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKASESCDVYSFGILLLELATGKKPLEKLSATMKRTITDWALPMVVEKKIDELADPKLNGDYNADELKRVILVALCCSHSRPENRPTMLEVVELLKGESKEKLAKLEDDELFKSHQVAAETTEISAGEDSSDFISEEKQKDSKEEVKESSTQNPNENSS 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 16921931 16925359 - Hsped.02g13390.1 Hepe02g1339 562840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1339 375 SMART serkin_6 40 311 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1339 375 ProSiteProfiles Protein kinase domain profile. 40 319 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1339 375 CDD STKc_IRAK 46 313 - -
Hepe02g1339 375 MobiDBLite consensus disorder prediction 334 375 - -
Hepe02g1339 375 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Hepe02g1339 375 SUPERFAMILY Protein kinase-like (PK-like) 23 311 IPR011009 -
Hepe02g1339 375 Pfam Protein tyrosine and serine/threonine kinase 42 310 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g1339 375 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524(InterPro)
Hepe02g1339 375 Gene3D Transferase(Phosphotransferase) domain 1 116 329 - -
Hepe02g1339 375 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Hepe02g1339 375 MobiDBLite consensus disorder prediction 347 366 - -
Hepe02g1339 375 PANTHER OS01G0750732 PROTEIN 22 348 IPR050885 -
Hepe02g1339 375 Coils Coil 305 325 - -
Hepe02g1339 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g1339 375 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1339 Hepe-Chr2:16921931 Hepe09g0512 Hepe-Chr9:4768475 1.54e-130 dispersed
Hepe10g0383 Hepe-Chr10:4209839 Hepe02g1339 Hepe-Chr2:16921931 1.84e-61 dispersed
Hepe10g0230 Hepe-Chr10:2432494 Hepe02g1339 Hepe-Chr2:16921931 2.55e-71 wgd
Hepe02g1339 Hepe-Chr2:16921931 Hepe03g1655 Hepe-Chr3:73408316 5.58e-72 wgd
Hepe02g1339 Hepe-Chr2:16921931 Hepe08g1161 Hepe-Chr8:11834456 1.19e-60 wgd
Hepe02g1339 Hepe-Chr2:16921931 Hepe09g0641 Hepe-Chr9:5979166 1.82e-60 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72557 PF00069 Pkinase 2.40E-44 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1339 - - - 0.0