Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1370 ATGGCGAAACAAAGGAAGTTCAGAGGAGTGAGGCAACGCCTGTGGGGCTCTTGGGTCTCTGAGATTCGTCACCCTCTCCTAAAAAAAAGGATTTGGTTGGGGACGTTTGATACCGCTGAAGACGCAGCCCGAGCCTACGATGAGGCCGCCGTTCTCATGAGTGGTCGAACCGCCAAGACCAACTTTCCAGTGAAAGCTACACTCCGAAGCGAAGCTAGAAATTTTCGTAAGTCTCCATTTCTAGACAAGACCAACTCAAGCACAGCATCGTCACCGTTATCAACAATTCTAAATGCTAAACTTCTCAAATGTTGCAAATCTCTACATCCTTCTCTAACTTGTCTCCGTCTCGACACCGAGAGTTGTCGCATCGGCGTCTGGCAGAGGCGTGCGGGACATCGTAGAGTGGCCGACTCGAACTGGGTGATGATGGTCGAGCTTGAGAAGAACGACGACGGATTCCGAGTGACGGACAAGTTGCCGGAAAAGGATGTGGAAGAGGTGAAATTATCAAGTACCAGAAAAAGTTTAGATGATGAGGAAAGAGCTGCTTTGCAGATGATTGAAGAACTTTTGAATAAGATATGA 588 48.13 MAKQRKFRGVRQRLWGSWVSEIRHPLLKKRIWLGTFDTAEDAARAYDEAAVLMSGRTAKTNFPVKATLRSEARNFRKSPFLDKTNSSTASSPLSTILNAKLLKCCKSLHPSLTCLRLDTESCRIGVWQRRAGHRRVADSNWVMMVELEKNDDGFRVTDKLPEKDVEEVKLSSTRKSLDDEERAALQMIEELLNKI 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 17426347 17427462 + Hsped.02g13700.1 Hepe02g1370 562871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1370 195 FunFam Ethylene-responsive transcription factor 2 5 65 - -
Hepe02g1370 195 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1370 195 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1370 195 Gene3D AP2/ERF domain 5 66 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1370 195 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677(InterPro)
Hepe02g1370 195 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1370 195 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1370 195 SMART rav1_2 6 69 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1370 195 Pfam AP2 domain 6 50 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1370 195 Coils Coil 174 194 - -
Hepe02g1370 195 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 3 136 IPR050913 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2025 Hepe-Chr1:84978406 Hepe02g1370 Hepe-Chr2:17426347 1.60e-65 dispersed
Hepe02g1370 Hepe-Chr2:17426347 Hepe10g0226 Hepe-Chr10:2400040 9.18e-31 dispersed
Hepe02g1370 Hepe-Chr2:17426347 Hepe08g2535 Hepe-Chr8:66945677 4.83e-55 wgd
Hepe02g1370 Hepe-Chr2:17426347 Hepe09g0678 Hepe-Chr9:6424384 2.17e-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55033 PF00847 AP2 4.40E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1370 - - - 0.0