Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1422 ATGGATGAGAGTTCAGGATCAAACAATGGAAACCACAGTGTTTCTTTGAATATCAAAGATGATTCTACAGCGGATTGTATCCCTGTACTTTTCGTTCAGAAGTTGATTGCAGAGGTGATGGGGACATATTTCTTGATATTTGCAGGGGAAGCTTCAGTAGTGGTGAATTTGAACAAAGATGGAGTCATCACTTTCCCAGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGATCTATTCTGTTGGCCATATATCTGGTGCTCATTTTAACCCTTCTGTCACCATAGCCTTTGCCATTACCAGGAGATTTCCATGGAAAGAGGTGCCAGCATATTTGGTAGCTCAAATTATTGGATCAACATTAGCAAGTGGGACACTTAGGCTAATATTTAATGGAACACAAGACCACTTTCCAGGAACTCTCCCAAGTGACTCATATCTGCAGACCTTTGTGATTGAATTCATAATCACATTTTACCTCATGTTTGTGGTATCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAGCTTGCTGGACTCGCCGTGGGTGCTACTGTACTTCTCAATGTGATGATTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATTTAAACAGTTCAAAGGGTTATGGATCTACATGACAGCACCTATTCTAGGAGCAACTGCAGGTGCGTTAGTGTATAATACCATCAGGTTCACAGATAAACCTCTACGAGAGATCACGAAAAGCGCCTCGTTCCTCAAAAGTCGTCAAGGCACCCCATGA 801 42.82 MDESSGSNNGNHSVSLNIKDDSTADCIPVLFVQKLIAEVMGTYFLIFAGEASVVVNLNKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPSVTIAFAITRRFPWKEVPAYLVAQIIGSTLASGTLRLIFNGTQDHFPGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMIAGPITGASMNPARSLGPAIVFKQFKGLWIYMTAPILGATAGALVYNTIRFTDKPLREITKSASFLKSRQGTP 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18086203 18087488 - Hsped.02g14220.1 Hepe02g1422 562923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1422 266 SUPERFAMILY Aquaporin-like 29 253 IPR023271 -
Hepe02g1422 266 NCBIfam MIP family channel protein 37 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1422 266 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Hepe02g1422 266 PANTHER AQUAPORIN NIP2-1 23 247 IPR034294 -
Hepe02g1422 266 CDD MIP 33 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1422 266 Gene3D Glycerol uptake facilitator protein. 8 254 IPR023271 -
Hepe02g1422 266 Pfam Major intrinsic protein 30 239 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1422 266 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1422 266 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1422 266 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1422 266 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1422 266 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1422 266 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1422 Hepe-Chr2:18086203 Hepe06g0442 Hepe-Chr6:23783290 8.94e-184 dispersed
Hepe02g1421 Hepe-Chr2:18073403 Hepe02g1422 Hepe-Chr2:18086203 3.25e-186 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1422 K09874 - csv:101219297 425.631