Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1438 ATGGCGGAACCAAATCAGAGGGATCAGAAACACTCAATTTACAGAGGCGTACGGAAGAGGAGTTGGGGCAAATGGGTCTCCGAGATCCGTCAACCGAGGAAGAAATCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGAGCACACGACGTGGCGGCGTTGAGCATCAAAGGCGATTCGGCTAAGGCGATTCTCAATTTCCCTCAACTCGCCGGGTTGCTTCCCCGGCCTGTGTCGCTAATGCCGAGGGATATTCAGGCTGCAGCGGCGAAGGCGGCGGCGATGGTTGAGTTTAATTCCACGACGGCGTCGTCGAATGAGGATGAAGGGTCTGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAACCAGAGCTGAGTCGTGGAACGAGTTCGAGTTGATTGACTCGGTTGATTGGTGGGGGAATCCACCGTTTGCGGCGGCCGAAATGGATTTCTTTGCGGGGGTTTCCGATCAGAGTATGATTCCGATCGCCTTCGACGGCGGCGTTTGGGAGTGTAAAATAAATAAATAA 558 53.76 MAEPNQRDQKHSIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSTTASSNEDEGSDELGEIVELPNIEEETRAESWNEFELIDSVDWWGNPPFAAAEMDFFAGVSDQSMIPIAFDGGVWECKINK 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18336072 18336629 - Hsped.02g14380.1 Hepe02g1438 562939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1438 185 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1438 185 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1438 185 Pfam AP2 domain 14 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1438 185 SMART rav1_2 13 78 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1438 185 SUPERFAMILY DNA-binding domain 12 73 IPR016177 GO:0003677(InterPro)
Hepe02g1438 185 ProSiteProfiles AP2/ERF domain profile. 13 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1438 185 Gene3D AP2/ERF domain 13 73 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1438 185 FunFam Ethylene-responsive transcription factor 2 12 73 - -
Hepe02g1438 185 CDD AP2 12 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1438 185 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 125 IPR051032 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1438 Hepe-Chr2:18336072 Hepe10g0364 Hepe-Chr10:3964166 2.20e-44 dispersed
Hepe02g1438 Hepe-Chr2:18336072 Hepe03g1526 Hepe-Chr3:72132703 1.10e-50 wgd
Hepe02g1438 Hepe-Chr2:18336072 Hepe08g2612 Hepe-Chr8:68003145 1.49e-41 wgd
Hepe02g1438 Hepe-Chr2:18336072 Hepe09g0797 Hepe-Chr9:7758930 1.55e-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55038 PF00847 AP2 3.80E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1438 K09286 - csv:101222354 303.908