Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g1438 | ATGGCGGAACCAAATCAGAGGGATCAGAAACACTCAATTTACAGAGGCGTACGGAAGAGGAGTTGGGGCAAATGGGTCTCCGAGATCCGTCAACCGAGGAAGAAATCTCGGATTTGGCTTGGGACTTTCACGACGGCGGAGATGGCGGCGCGAGCACACGACGTGGCGGCGTTGAGCATCAAAGGCGATTCGGCTAAGGCGATTCTCAATTTCCCTCAACTCGCCGGGTTGCTTCCCCGGCCTGTGTCGCTAATGCCGAGGGATATTCAGGCTGCAGCGGCGAAGGCGGCGGCGATGGTTGAGTTTAATTCCACGACGGCGTCGTCGAATGAGGATGAAGGGTCTGATGAATTGGGGGAGATTGTGGAATTGCCCAATATTGAAGAGGAAACCAGAGCTGAGTCGTGGAACGAGTTCGAGTTGATTGACTCGGTTGATTGGTGGGGGAATCCACCGTTTGCGGCGGCCGAAATGGATTTCTTTGCGGGGGTTTCCGATCAGAGTATGATTCCGATCGCCTTCGACGGCGGCGTTTGGGAGTGTAAAATAAATAAATAA | 558 | 53.76 | MAEPNQRDQKHSIYRGVRKRSWGKWVSEIRQPRKKSRIWLGTFTTAEMAARAHDVAALSIKGDSAKAILNFPQLAGLLPRPVSLMPRDIQAAAAKAAAMVEFNSTTASSNEDEGSDELGEIVELPNIEEETRAESWNEFELIDSVDWWGNPPFAAAEMDFFAGVSDQSMIPIAFDGGVWECKINK | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 18336072 | 18336629 | - | Hsped.02g14380.1 | Hepe02g1438 | 562939 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g1438 | 185 | PRINTS | Ethylene responsive element binding protein signature | 36 | 52 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g1438 | 185 | PRINTS | Ethylene responsive element binding protein signature | 14 | 25 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g1438 | 185 | Pfam | AP2 domain | 14 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g1438 | 185 | SMART | rav1_2 | 13 | 78 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g1438 | 185 | SUPERFAMILY | DNA-binding domain | 12 | 73 | IPR016177 | GO:0003677(InterPro) | |
Hepe02g1438 | 185 | ProSiteProfiles | AP2/ERF domain profile. | 13 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g1438 | 185 | Gene3D | AP2/ERF domain | 13 | 73 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g1438 | 185 | FunFam | Ethylene-responsive transcription factor 2 | 12 | 73 | - | - | |
Hepe02g1438 | 185 | CDD | AP2 | 12 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g1438 | 185 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 8 | 125 | IPR051032 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g1438 | Hepe-Chr2:18336072 | Hepe10g0364 | Hepe-Chr10:3964166 | 2.20e-44 | dispersed | |
Hepe02g1438 | Hepe-Chr2:18336072 | Hepe03g1526 | Hepe-Chr3:72132703 | 1.10e-50 | wgd | |
Hepe02g1438 | Hepe-Chr2:18336072 | Hepe08g2612 | Hepe-Chr8:68003145 | 1.49e-41 | wgd | |
Hepe02g1438 | Hepe-Chr2:18336072 | Hepe09g0797 | Hepe-Chr9:7758930 | 1.55e-42 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55038 | PF00847 | AP2 | 3.80E-13 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g1438 | K09286 | - | csv:101222354 | 303.908 |