Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1450 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCAATCACCTCAAAGCTGCTGCTATAATCGGCAACGACGCTAGTGTTTGGGCTCAGAGCGCTGACTTCCCCCAGTTCAAGCCAGAAGAGATTAATGCCATTATTAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGATTGTACCTTTCTGGAGCCAAGTACATGGTTATCCAGGGGGAACCTGGAGCTGTTATCCGTGGAAAGAAGGGGACTTCTGGGATCACTGTTAAGAAAACAACTCAAGCACTGATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAAAAGTTGGGAGATTACCTGATTGATCAAGGCCTGTAG 396 45.71 MSWQSYIDDQLMYEVDGNHLKAAAIIGNDASVWAQSADFPQFKPEEINAIIKDFDEPGSLAPTGLYLSGAKYMVIQGEPGAVIRGKKGTSGITVKKTTQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18595407 18596969 - Hsped.02g14500.1 Hepe02g1450 562951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1450 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Hepe02g1450 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Hepe02g1450 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Hepe02g1450 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Hepe02g1450 131 FunFam Profilin 1 131 - -
Hepe02g1450 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Hepe02g1450 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1450 K05759 - - csv:101218089 247.284
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2208 Hepe-Chr1:86783245 Hepe02g1450 Hepe-Chr2:18595407 9.56e-12 transposed
Hepe02g1450 Hepe-Chr2:18595407 Hepe03g1504 Hepe-Chr3:71886176 6.31e-75 wgd
Hepe02g1450 Hepe-Chr2:18595407 Hepe08g2631 Hepe-Chr8:68269820 1.65e-72 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g263 . . . . . . . . Cmo08g00707 Cmo17g00727 Cma01g00091 . Car01g00075 Car14g01139 Sed06g2183 Cpe12g00643 Cpe17g00524 Bhi01g03373 Tan04g2694 Cmetu04g1863 Lac11g0782 Hepe02g1450 . . Cla07g01272 Cam07g1227 Cec07g1455 Cco07g1416 Clacu07g1338 Cmu07g1316 Cre07g1699 . Cone17ag0127 . . Lsi02g02980 . Chy04g00956 . . . . . . . . . . Cmo01g00092 Cmo14g01321 Cma08g00743 Cma17g00758 Car08g00630 Car17g00703 Cpe02g01699 Cpe03g01090 Bhi09g00471 . . . . . . Cla09g00022 Cam09g0024 . Cco09g0025 . . . Lsi07g00531 Csa03g02348 . Cme04g01148
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.3e-213 737.6
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 5.6e-213 736.9
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT2G37620 93.9 4.7e-212 733.8
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT2G37620 94.7 1.1e-197 686.0
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT2G37620 97.4 2.1e-106 382.9
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT2G37620 92.6 1.7e-92 336.7
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT2G37620 94.5 2.5e-56 216.5
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT2G37620 92.5 5.9e-53 205.3
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.2e-212 735.7
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 1.5e-210 728.8
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.4e-210 727.6
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT5G59370 93.4 1.7e-209 725.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT5G59370 96.4 5.4e-200 693.7
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT5G59370 98.4 4.1e-107 385.2
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT5G59370 90.3 6.0e-90 328.2
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT5G59370 92.7 2.8e-55 213.0
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT5G59370 90.7 6.5e-52 201.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.6e-213 736.9
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 6.9e-211 729.9
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G46520 93.6 7.6e-210 726.5
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G46520 96.1 1.6e-199 692.2
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G46520 98.4 4.1e-107 385.2
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT3G46520 90.9 2.7e-90 329.3
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT3G46520 92.7 2.8e-55 213.0
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G46520 90.7 6.5e-52 201.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 7.3e-213 736.5
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.6e-213 736.1
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.1e-212 734.9
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G12110 94.7 3.6e-212 734.2
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G12110 95.5 4.6e-199 690.6
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G12110 98.9 1.9e-107 386.3
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT3G12110 92.0 3.8e-92 335.5
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT3G12110 93.6 1.5e-56 217.2
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G12110 92.5 2.6e-53 206.5
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G18780 93.4 2.2e-209 724.9
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.9e-209 723.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 5.4e-208 720.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G18780 92.2 3.1e-195 677.9
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G18780 93.1 1.2e-103 373.6
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT3G18780 91.5 1.1e-91 334.0
Hepe04g0054 . 2 110 Cytoskeleton Gene Families AT3G18780 91.7 1.7e-55 213.8
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G18780 89.7 1.7e-52 203.8
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT1G49240 93.6 7.6e-210 726.5
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 1.9e-208 721.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 5.4e-208 720.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT1G49240 92.4 1.1e-195 679.5
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT1G49240 93.7 4.3e-104 375.2
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT1G49240 91.5 1.1e-91 334.0
Hepe04g0054 . 2 110 Cytoskeleton Gene Families AT1G49240 91.7 1.7e-55 213.8
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT1G49240 89.7 1.7e-52 203.8
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.4e-217 749.6
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 1.9e-216 748.4
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 5.6e-213 736.9
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.6e-212 734.2
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT5G09810 95.0 5.1e-198 687.2
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT5G09810 98.4 9.2e-107 384.0
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT5G09810 97.2 1.6e-95 346.7
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT5G09810 92.7 1.3e-55 214.2
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT5G09810 90.7 2.9e-52 203.0
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 6.8e-57 216.9
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT2G19760 73.3 9.8e-56 213.0
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 4.1e-54 207.6
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT4G29350 74.8 2.6e-56 214.9
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT4G29350 76.3 7.5e-56 213.4
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT4G29350 72.5 4.6e-53 204.1
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT4G29340 73.9 9.1e-57 216.5
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 6.5e-55 210.3
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 1.2e-53 206.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000501 4 6 1 4 4 2 6 4 2 3 2 1 3 3 3 6 2 7 7 3 3 3 2 4 5 5 3 6 4 4 112