Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1450 ATGTCGTGGCAATCTTACATTGATGATCAGTTGATGTATGAGGTCGATGGCAATCACCTCAAAGCTGCTGCTATAATCGGCAACGACGCTAGTGTTTGGGCTCAGAGCGCTGACTTCCCCCAGTTCAAGCCAGAAGAGATTAATGCCATTATTAAGGATTTTGATGAGCCTGGATCTCTTGCCCCGACTGGATTGTACCTTTCTGGAGCCAAGTACATGGTTATCCAGGGGGAACCTGGAGCTGTTATCCGTGGAAAGAAGGGGACTTCTGGGATCACTGTTAAGAAAACAACTCAAGCACTGATTTTTGGTTTATATGATGAACCCATGACTCCAGGACAGTGCAACATGATTGTTGAAAAGTTGGGAGATTACCTGATTGATCAAGGCCTGTAG 396 45.71 MSWQSYIDDQLMYEVDGNHLKAAAIIGNDASVWAQSADFPQFKPEEINAIIKDFDEPGSLAPTGLYLSGAKYMVIQGEPGAVIRGKKGTSGITVKKTTQALIFGLYDEPMTPGQCNMIVEKLGDYLIDQGL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 18595407 18596969 - Hsped.02g14500.1 Hepe02g1450 562951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1450 131 SUPERFAMILY Profilin (actin-binding protein) 2 130 IPR036140 -
Hepe02g1450 131 Gene3D Dynein light chain 2a, cytoplasmic 1 131 - -
Hepe02g1450 131 CDD PROF 2 130 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
Hepe02g1450 131 Pfam Profilin 1 131 IPR048278 GO:0003779(InterPro)
Hepe02g1450 131 FunFam Profilin 1 131 - -
Hepe02g1450 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Hepe02g1450 131 PANTHER PROFILIN 1 130 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Hepe02g1450 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2208 Hepe-Chr1:86783245 Hepe02g1450 Hepe-Chr2:18595407 9.56e-12 transposed
Hepe02g1450 Hepe-Chr2:18595407 Hepe03g1504 Hepe-Chr3:71886176 6.31e-75 wgd
Hepe02g1450 Hepe-Chr2:18595407 Hepe08g2631 Hepe-Chr8:68269820 1.65e-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1450 K05759 - csv:101218089 247.284