Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1473 ATGCAAGACCCATCAACATTTCAGCCGATTAAACCCCAATTTCCAGAACAAGAGCAACTCAAATGCCCTCGTTGTGATTCTGCAAACACCAAATTTTGCTATTACAATAATTATAATCTTTCTCAGCCTCGTCACTTTTGCAAGAATTGCCGCCGGTACTGGACCAAAGGCGGTGCTCTTCGCAACATCCCCGTCGGCGGCGGCAGCCGGAAAAATTCCAAGCGGACGGCGGCGCCGGTGTCGACCTCCATCAAACGCCCGCCATCCTCCTCGTCTTCCTCTTCTTCGACCTCCACACAGAACCCGATTACGGGTTCGGATCACAACCCGATCCGGGGTTACGGTGGGTTGGATATTCCGGGGAGCTTCAGTTCGCTGCTGGCATCGAATGGGCAATTTGGGAATCTCTTGGAGGGTGTCGATCCGAATCAATCGGAGCTGAAAATGATGGAATTGGGTGGTTTTTCAGAGAATTTGAATTCTGGGTCTGGCCGGAAATCTGCAGCGGAGGAACAGAGCGCCGCCGTGCAGGGGAATTATTTGGGTGTTTTGCAAAACGGAGATTCTAGTTGTTGGACCGGCGGCGGGAGTAATGGATGGCCTGATCTTGCCATTTTCACACCAGGGTCAAGTTATCAGTAA 642 51.56 MQDPSTFQPIKPQFPEQEQLKCPRCDSANTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNSKRTAAPVSTSIKRPPSSSSSSSSTSTQNPITGSDHNPIRGYGGLDIPGSFSSLLASNGQFGNLLEGVDPNQSELKMMELGGFSENLNSGSGRKSAAEEQSAAVQGNYLGVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19095389 19096030 - Hsped.02g14730.1 Hepe02g1473 562974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1473 213 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g1473 213 MobiDBLite consensus disorder prediction 61 114 - -
Hepe02g1473 213 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g1473 213 MobiDBLite consensus disorder prediction 74 107 - -
Hepe02g1473 213 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g1473 213 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 129 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1473 Hepe-Chr2:19095389 Hepe04g1213 Hepe-Chr4:67450637 5.24e-37 dispersed
Hepe02g1473 Hepe-Chr2:19095389 Hepe10g0692 Hepe-Chr10:9144633 5.16e-36 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55041 PF02701 zf-Dof 2.10E-33 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1473 - - - 0.0