Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1473 ATGCAAGACCCATCAACATTTCAGCCGATTAAACCCCAATTTCCAGAACAAGAGCAACTCAAATGCCCTCGTTGTGATTCTGCAAACACCAAATTTTGCTATTACAATAATTATAATCTTTCTCAGCCTCGTCACTTTTGCAAGAATTGCCGCCGGTACTGGACCAAAGGCGGTGCTCTTCGCAACATCCCCGTCGGCGGCGGCAGCCGGAAAAATTCCAAGCGGACGGCGGCGCCGGTGTCGACCTCCATCAAACGCCCGCCATCCTCCTCGTCTTCCTCTTCTTCGACCTCCACACAGAACCCGATTACGGGTTCGGATCACAACCCGATCCGGGGTTACGGTGGGTTGGATATTCCGGGGAGCTTCAGTTCGCTGCTGGCATCGAATGGGCAATTTGGGAATCTCTTGGAGGGTGTCGATCCGAATCAATCGGAGCTGAAAATGATGGAATTGGGTGGTTTTTCAGAGAATTTGAATTCTGGGTCTGGCCGGAAATCTGCAGCGGAGGAACAGAGCGCCGCCGTGCAGGGGAATTATTTGGGTGTTTTGCAAAACGGAGATTCTAGTTGTTGGACCGGCGGCGGGAGTAATGGATGGCCTGATCTTGCCATTTTCACACCAGGGTCAAGTTATCAGTAA 642 51.56 MQDPSTFQPIKPQFPEQEQLKCPRCDSANTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKNSKRTAAPVSTSIKRPPSSSSSSSSTSTQNPITGSDHNPIRGYGGLDIPGSFSSLLASNGQFGNLLEGVDPNQSELKMMELGGFSENLNSGSGRKSAAEEQSAAVQGNYLGVLQNGDSSCWTGGGSNGWPDLAIFTPGSSYQ 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19095389 19096030 - Hsped.02g14730.1 Hepe02g1473 562974

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1473 213 ProSiteProfiles Zinc finger Dof-type profile. 20 74 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g1473 213 MobiDBLite consensus disorder prediction 61 114 - -
Hepe02g1473 213 Pfam Dof domain, zinc finger 18 74 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g1473 213 MobiDBLite consensus disorder prediction 74 107 - -
Hepe02g1473 213 ProSitePatterns Zinc finger Dof-type signature. 22 58 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g1473 213 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 129 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1473 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1473 Hepe-Chr2:19095389 Hepe04g1213 Hepe-Chr4:67450637 5.24e-37 dispersed
Hepe02g1473 Hepe-Chr2:19095389 Hepe10g0692 Hepe-Chr10:9144633 5.16e-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1473 . 12 153 C2C2-Dof Transcription Factor Family AT1G51700 55.3 3.0e-37 152.1
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT1G29160 54.7 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT1G29160 68.8 1.7e-42 169.5
Hepe07g1867 . 58 180 C2C2-Dof Transcription Factor Family AT2G34140 64.3 9.8e-40 160.2
Hepe04g1916 . 6 160 C2C2-Dof Transcription Factor Family AT2G34140 52.4 1.8e-38 156.0
Hepe05g0180 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 67.4 4.5e-41 165.6
Hepe02g3032 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 64.7 1.4e-37 154.1
Hepe06g1450 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 78.8 5.0e-43 172.2
Hepe08g0797 . 1 127 C2C2-Dof Transcription Factor Family AT5G02460 57.7 1.9e-38 157.1
Hepe10g1221 . 57 138 C2C2-Dof Transcription Factor Family AT5G02460 85.4 4.3e-38 156.0
Hepe04g0864 . 34 126 C2C2-Dof Transcription Factor Family AT3G55370 72.3 1.3e-36 151.0
Hepe09g0293 . 24 327 C2C2-Dof Transcription Factor Family AT5G60850 50.5 2.2e-42 169.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007364 2 1 1 1 2 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55041 PF02701 zf-Dof 2.10E-33 No_clan Hepe TF