Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1503 ATGATAAAAAGTTTGCTGTTTCAACAACAAGCTCAAGCTCAAGCTATGGAGGAAAATTTGTCGAATTTAACTTCAGCTTCCGGTGAAGCTAGTGCCTGCTCCGGCAACCATTCCGATCAGATTCCGGTCAACTATTCCGGCGGTGGCGGCCAGTATTTTTCTGCTCCACCACCACCAAAAAAGAAGAGAAACCTCCCCGGAAATCCAGACCCAGATGCGGAAGTGATAGCTTTATCGCCGAAGTCGCTTATGGCGACGAATCGATTCTTATGCGAGATCTGCAACAAGGGGTTTCAGAGAGATCAAAATCTTCAACTTCATAGAAGAGGGCACAATTTGCCATGGAAGTTGAAGCAAAGATCAAACAAAGATGTGATAAGGAAGAAAGTTTATGTGTGTCCAGAAACAAGCTGTGTTCACCATGATCCATCAAGGGCTCTTGGGGACTTGACAGGAATCAAGAAGCACTTTTGCAGAAAGCATGGTGAGAAGAAATGGAAATGTGATAAGTGCTCTAAGAGGTACGCAGTTCAATCAGATTGGAAAGCACATTCTAAGACTTGTGGCACTAGAGAGTACAGATGTGACTGTGGAACCCTTTTCTCGAGGAGGGATAGTTTCATCACCCATAGAGCTTTTTGTGATGCTTTGGCAGAGGAAAGTGCAAGATCAGCCATTACATCAAACCCAATACTAATTACCAATAATAATAATCAAAACCCTCCACTAATTTCCACTCCCATTTCTTCAACAATCTCCCATTTAAACTTTCAAACACAATCCCATTTCAATCCATTGGATATCAACTCATTCTCCCTCAAAAAAGAGCACCAAAATCATCACCAAATCAACTCACCCAATAATAATTTCATTCCCCCATGGCTGGCTGCTAATTATCCCTCAAGATCATCATTATTAGATCATAATCAAGACCTTAATCCAATCATAAACCCTAATAATAATCTTGGTCCTACTTCTCTTCATCTTCCAAGTGCTTCTTCCCCTTCTCCACACATGTCAGCCACAGCACTTCTCCAGAAAGCAGCTCAAATGGGAGCTACCATGAGCAGTAGTAATAATATTAATAATAATAATAATAATAATTCTGAGGATCATCACGTGCCTGTTTCTTCTGCCACCAATAATAACAACACTACAAGTTGTAATTTTGGCCTTAACTTGTCCTCCTCCTCACGTGACAATAATCCTCAGATTTTGATGATGGGCAATGAAGCTGCAGGGCTTTCTCATGCACTGCCACTCTACAGGAACAAATCCACTTCTAATTCTTCACTCCTTCAAAGCACTTTCATCAACACCACTTTCTCTCCCAGTGCTTTTGAAGGGACTTCTTTCGAATTAGATGCATTTGGAGGGGTTTTGAAGAAAGATCATGAGATTTTTAATGACCATGATCATAATGCAATCATAATGTCAAGATCAAGTGATCAAGAAGGGCTGAGTACAAGAGATTTCTTGGGGCTTAGAGCTATTTCTCACAGTGAGTTTTTGAGTAATATTGCAGCTGCTGGTTATGGTAATTGCATGAATAATGGTGCTGCTGGTCAAACTCCTCAAAGTCAAATTCAAAAGCAACCCACCTGGCAAGGTTAG 1614 41.02 MIKSLLFQQQAQAQAMEENLSNLTSASGEASACSGNHSDQIPVNYSGGGGQYFSAPPPPKKKRNLPGNPDPDAEVIALSPKSLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDVIRKKVYVCPETSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSAITSNPILITNNNNQNPPLISTPISSTISHLNFQTQSHFNPLDINSFSLKKEHQNHHQINSPNNNFIPPWLAANYPSRSSLLDHNQDLNPIINPNNNLGPTSLHLPSASSPSPHMSATALLQKAAQMGATMSSSNNINNNNNNNSEDHHVPVSSATNNNNTTSCNFGLNLSSSSRDNNPQILMMGNEAAGLSHALPLYRNKSTSNSSLLQSTFINTTFSPSAFEGTSFELDAFGGVLKKDHEIFNDHDHNAIIMSRSSDQEGLSTRDFLGLRAISHSEFLSNIAAAGYGNCMNNGAAGQTPQSQIQKQPTWQG 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19588767 19591564 - Hsped.02g15030.1 Hepe02g1503 563004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1503 537 SMART c2h2final6 89 111 IPR013087 -
Hepe02g1503 537 SMART c2h2final6 166 186 IPR013087 -
Hepe02g1503 537 SMART c2h2final6 131 161 IPR013087 -
Hepe02g1503 537 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Hepe02g1503 537 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 41 502 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe02g1503 537 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Hepe02g1503 537 FunFam protein indeterminate-domain 12-like 68 137 - -
Hepe02g1503 537 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Hepe02g1503 537 Coils Coil 6 26 - -
Hepe02g1503 537 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Hepe02g1503 537 MobiDBLite consensus disorder prediction 356 382 - -
Hepe02g1503 537 Gene3D Classic Zinc Finger 144 224 - -
Hepe02g1503 537 Gene3D Classic Zinc Finger 70 140 - -
Hepe02g1503 537 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Hepe02g1503 537 MobiDBLite consensus disorder prediction 44 72 - -
Hepe02g1503 537 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Hepe02g1503 537 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 227 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g0018 Hepe-Chr1:2446251 Hepe02g1503 Hepe-Chr2:19588767 1.85e-97 dispersed
Hepe01g1888 Hepe-Chr1:83724621 Hepe02g1503 Hepe-Chr2:19588767 1.45e-105 dispersed
Hepe02g1503 Hepe-Chr2:19588767 Hepe10g1107 Hepe-Chr10:43772864 9.93e-108 dispersed
Hepe02g1503 Hepe-Chr2:19588767 Hepe03g1458 Hepe-Chr3:71360079 2.53e-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55042 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1503 K25870 - csv:101204728 626.706