Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1516 ATGGCTGGTTTGGCTCCAGAAGGATCCCAATTTGATGCGCGTCAGTATGACACGAAAATGAATGAGTTACTTTCAGCTGATGGACAGGATTTCTTCACCTCATATGATGAAGTTTATGATAGTTTTGATTCTATGGGCCTGCAAGAAAACCTTCTCAGAGGCATCTATGCTTATGGTTTTGAGAAGCCATCTGCAATTCAGCAAAGGGGAATTGTTCCTTTCTGCAAAGGGCTTGATGTTATCCAACAAGCGCAGTCTGGAACAGGGAAGACTGCAACTTTCTGCTCTGGCATTTTGCAGCAACTTGATTATGGAAACGTGCAATGCCAGGCTCTGGTCTTAGCACCCACTAGGGAACTTGCACAACAGATCGAGAAGGTTATGCGAGCCCTTGGTGATTATCTTGGTGTGAAGGTTCATGCTTGTGTCGGTGGAACAAGTGTACGTGAGGACCAACGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGTACCCCTGGTCGTGTGTTTGATATGTTGCGTAGACAGTCACTTCGTCCCGACTACATTAAGATGTTTGTGTTGGATGAGGCTGATGAAATGCTTTCTCGTGGATTCAAGGATCAGATTTATGACATTTTCCAGCTGCTACCATCCAAGATTCAAGTCGGGGTATTCTCTGCTACCATGCCGCCTGAAGCCCTTGAGATCACCAGGAAGTTCATGAACAAGCCTGTAAGAATTCTCGTCAAGCGTGATGAGCTCACCTTGGAAGGTATCAAGCAGTTCTATGTCAATGTTGACAAGGAAGACTGGAAGCTCGAGACTCTCTGTGATCTTTATGAGACTTTGGCCATCACCCAGAGTGTCATCTTCGTCAATACTCGACGAAAAGTTGATTGGCTCACTGATAAGATGCGAGGCCGTGACCACACGGTATCTGCTACCCATGGTGACATGGACCAGAACACTAGAGACATTATTATGCGTGAGTTCCGTTCAGGCTCTTCCAGAGTTCTCATTACCACCGATCTATTGGCTCGTGGTATCGATGTCCAGCAGGTTTCTCTTGTTATAAACTATGATCTGCCGACACAACCCGAGAACTACCTTCATCGTATAGGAAGAAGTGGACGTTTTGGAAGAAAAGGTGTTGCCATCAACTTTGTAACGACCGAGGATGAAAGAATGCTATTCGACATTCAGAAGTTCTACAATGTGGTAATTGAAGAGCTGCCAGCTAATGTTGCCGATCTCCTGTGA 1242 45.57 MAGLAPEGSQFDARQYDTKMNELLSADGQDFFTSYDEVYDSFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGNVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTEDERMLFDIQKFYNVVIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 19799132 19802376 + Hsped.02g15160.1 Hepe02g1516 563017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1516 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Hepe02g1516 413 SMART helicmild6 293 374 IPR001650 -
Hepe02g1516 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Hepe02g1516 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Hepe02g1516 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Hepe02g1516 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Hepe02g1516 413 Gene3D - 249 413 IPR027417 -
Hepe02g1516 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Hepe02g1516 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Hepe02g1516 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Hepe02g1516 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Hepe02g1516 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Hepe02g1516 413 CDD SF2_C_DEAD 253 383 - -
Hepe02g1516 413 Gene3D - 30 248 IPR027417 -
Hepe02g1516 413 SMART ultradead3 59 256 IPR014001 -
Hepe02g1516 413 CDD DEADc_EIF4A 45 242 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1190 Hepe-Chr2:14963584 Hepe02g1516 Hepe-Chr2:19799132 1.47e-173 dispersed
Hepe02g1516 Hepe-Chr2:19799132 Hepe08g1404 Hepe-Chr8:16548923 2.77e-293 dispersed
Hepe02g1516 Hepe-Chr2:19799132 Hepe03g1451 Hepe-Chr3:71286046 1.37e-293 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1516 K03257 - csv:101223055 811.986