Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1531 ATGAGTAATTGGTTGGGTTTTTCTCTCACTCCCCACCTCAGAATCAATGATGCCTCCACCGCCGCCGACGACGCCTTCCCTCCCCTCATGCCCCTCCGCTCCGATGGATCTCTTTCTATCTCTGCCGCCGCCGCCGCCGCCCACGATTGGAGATCATACGAGAATGAAATGAGTGCAACGAATGAAGAGGAAAGTCCAAAACTTGAGGACTTTTTGGGGAATTGCTATTCAAACTCACCGCCAAACGATCAGACGCGTAATAATAACAACAACGCCTTTATTCACCCGAATAATAATAATAATAATGATGATAATTATCACTACCAGGGCGATCATCAATCTTTAATTAATAATAATAATAATAATAATGCAATTTACAAGTCGTGGTTAGGGCCGACTAATTCGCAAAACGGGTGTGGATTAATTCAATCTTTGTCTCTCGGGATGACTCCGGCCAACTCCCAAAACGACATCGCTTCTTCATTCACTTCGCCGCCCTCCCCGCCGCCGCATGTGGCGCCTGATTCCCGGAAACGTCCCATGCCGGTGGCCAAGCCTCTTATTAAAGAACCTGTTCCTAGAAAGTCTATTGATACTTTTGGACAAAGAACCTCTCAGTATCGCGGTGTCACAAGGCATAGATGGACAGGAAGATATGAGGCACATTTATGGGACAACAGCTGTAGAAAAGAGGGCCAAACAAGGAAGGGAAGGCAAGTTTATCTTGGTGGTTATGATAAAGAAGAGAAAGCAGCACGAGCGTATGATTTAGCTGCACTAAAATATTGGGGTCCTACGACGCATATAAATTTCCCCCTGAGCGATTACGAAAATGAGCTGGAAGAGATGAAAAACATGACGAGGCAGGAGTTTGTAGCGAATTTGAGAAGAAAAAGCAGTGGATTCTCGAGAGGAGCTTCAATGTACAGAGGAGTAACAAGACATCATCAACATGGAAGGTGGCAAGCTAGAATTGGAAGGGTTGCTGGAAATAAAGATTTGTACCTCGGCACATTTAGCACACAAGAGGAGGCCGCGGAGGCCTATGACATAGCGGCGATCAAGTTTAGAGGGACGAGTGCAGTGACGAATTTCGACATTAGTAGGTATGACGTGAAGAGGATTTGCTCTAGTTCGACTTTGATTGCTGGTGACCTTGCGAAACGTTCGCCATTAAAGGACGGTACTCTCTCGACGAATGAAGACTATACTGCATGTGCTTCTTCGCCATCGTCGTCCTCGCAACCTCTCTTGGCCATCACTGGTGATGGTGGTGTCGAGAGCCACCACGAGTTGGCTGACATGGTTTGGTGTGACAATGTTGGTGGAGACGACGATAATAATCAACATCACGAGAATGCAGCAAAGATGAACAACGACTTGAGTTTGATGGGTTGTTCGAGCAACATGCAAGATTCATCGAAGTGTTGCACAACGCAAAACAACGGGGAGTTCGGGGTCGGGGTCGAGGGAGGCGAGTATTCACAAGGCTATTTCTCAATGCAAGAAGCAAAATATGATGAAGATGATGGGAATGATGAGAGGCAGAAGGATCAAAATAGGCAGGCCGTGGGAAATAATGTAACATTGGGTCATGATCATGATCATGTTCCAATGTTTGCTTTATGGAACGAATGA 1638 46.21 MSNWLGFSLTPHLRINDASTAADDAFPPLMPLRSDGSLSISAAAAAAHDWRSYENEMSATNEEESPKLEDFLGNCYSNSPPNDQTRNNNNNAFIHPNNNNNNDDNYHYQGDHQSLINNNNNNNAIYKSWLGPTNSQNGCGLIQSLSLGMTPANSQNDIASSFTSPPSPPPHVAPDSRKRPMPVAKPLIKEPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTHINFPLSDYENELEEMKNMTRQEFVANLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGDLAKRSPLKDGTLSTNEDYTACASSPSSSSQPLLAITGDGGVESHHELADMVWCDNVGGDDDNNQHHENAAKMNNDLSLMGCSSNMQDSSKCCTTQNNGEFGVGVEGGEYSQGYFSMQEAKYDEDDGNDERQKDQNRQAVGNNVTLGHDHDHVPMFALWNE 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20239052 20243984 + Hsped.02g15310.1 Hepe02g1531 563032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1531 545 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 98 428 - -
Hepe02g1531 545 CDD AP2 307 368 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 MobiDBLite consensus disorder prediction 77 107 - -
Hepe02g1531 545 ProSiteProfiles AP2/ERF domain profile. 308 366 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 FunFam AP2-like ethylene-responsive transcription factor ANT 205 274 - -
Hepe02g1531 545 PRINTS Ethylene responsive element binding protein signature 348 368 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 PRINTS Ethylene responsive element binding protein signature 207 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 SMART rav1_2 308 372 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 SMART rav1_2 206 278 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 SUPERFAMILY DNA-binding domain 307 368 IPR016177 GO:0003677(InterPro)
Hepe02g1531 545 Gene3D AP2/ERF domain 205 274 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 Gene3D AP2/ERF domain 308 368 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 Pfam AP2 domain 309 358 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 Pfam AP2 domain 206 264 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 ProSiteProfiles AP2/ERF domain profile. 206 272 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 CDD AP2 205 274 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g1531 545 MobiDBLite consensus disorder prediction 152 181 - -
Hepe02g1531 545 FunFam AP2-like ethylene-responsive transcription factor 307 368 - -
Hepe02g1531 545 SUPERFAMILY DNA-binding domain 205 274 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1850 Hepe-Chr1:83397307 Hepe02g1531 Hepe-Chr2:20239052 9.54e-20 dispersed
Hepe02g1531 Hepe-Chr2:20239052 Hepe04g1342 Hepe-Chr4:69024398 3.18e-119 dispersed
Hepe02g1531 Hepe-Chr2:20239052 Hepe08g1355 Hepe-Chr8:15751383 8.93e-124 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55046 PF00847 AP2 4.20E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1531 K09285 - csv:101205762 759.599