Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1572 ATGATGCTTCATTCCGTAGGAGCTGCTAGACAAACTTGTAGCTTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGATTTTGCTGAGGATAAGTTGGAATACCCTTTTCCAGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTCTGTCGAATCCAAGCAAGGATGAATTTAGTAGAGTTGTAGAATCATGTCAACCGAGCTTCGTCTACTTGCAAGGGGAACAACTCGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGAACTATTCAATACTACACTACCAACCACAGTGTATTTAGAAGTCCCAAATGGAGGCAGAATAGCTGAGGCTCTTTATTCTAAGGGAGTTCCTTATGTCATGTATTGGAACAACACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTCTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAATGCTGACAATATTAGGAGTGATCTAGAGCCACAACTTATTGGGGAACCTCTACAGATTAACGTTGAACCCCTCGAGATAGATGAAGGTGAAGGTGAAGGTGAAGGTGAAGATGAAGATGGTTCTCTAGGAACCCTCCCTGCCATAAGCATACATGATAATAATGTGACCGTGAAATTTCTTATCTGTGGAGTGCCTTGCACACCGGATTCGTGCTTATTGACATCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTTAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTCGTGACAATGCGATGTGATATGGTGACCTGTAGTTCAGCCCATATCTCAGTATTGGTGTCCGGTAGTGCTCATACTTGTTTTGATGATCAGCTGTTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCCATGCATGAATGTGAAGGCAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTAGCTTGTGGGGCATCAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTTGGCATTGGAGGAGTTCAGGGTTTGCCTGTTGCTTCTTTCGAGAAAGAGGATGCTGAGCGGTTGCTCTTCTTTTGTTCAAGTGATGAAAATGATAAACATTCAGATCAGTTGCTTTTAACTGTGCTGCCCAGCTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGCCTAGGAATAAGGAACACTCTTTCACATGACAATCTTGCATATGCAAATATCCCTTCCATTAGAAGAGTAGGTGGAGAGGAGCCTGCACCAATGAATGGGTTTAAGGCACCTTTACTCCCAGCTAGGAAAAAATTAAAAGTAGCCACCATGAGGCCGATTCCACGTGTGTATCGGAATAAAATGACACCTTTCTCTGGATTGACTGAAGCAGATGGGAACAATGGAGGCCAACCCAAGGCTAGTTTTCCCGTCATTACCCCGTCAAAGCATGTAACCGGAGGATCAACTTCTGCAACTCAAAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCTGAGGAGGAGTTCTTGAAAGATGTTATGGAGTTTTTACTACTTAGAGGACATTCACGACTTATTCCTCAAGGTGGATTTGACGAGTTCCCAGATGCCATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTTGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAACGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATCTGTGGTGAATGGGCTCATTTCGGGTGCGACCGGAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACACAGAATAGCAAACGGGTCTCCGCAAGGAATAACGAATCCACGGATACCTTGA 2346 43.35 MMLHSVGAARQTCSLLAVTCGSVPKVKCEEDFAEDKLEYPFPELVSSGRLEVRVLSNPSKDEFSRVVESCQPSFVYLQGEQLENDEIGSLVWNGVDLSLEDLCELFNTTLPTTVYLEVPNGGRIAEALYSKGVPYVMYWNNTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGNADNIRSDLEPQLIGEPLQINVEPLEIDEGEGEGEGEDEDGSLGTLPAISIHDNNVTVKFLICGVPCTPDSCLLTSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHECEGNKHHMHEPRKSASVACGASVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSSDENDKHSDQLLLTVLPSWFKPPTPSRKRVEPSLGIRNTLSHDNLAYANIPSIRRVGGEEPAPMNGFKAPLLPARKKLKVATMRPIPRVYRNKMTPFSGLTEADGNNGGQPKASFPVITPSKHVTGGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGFDEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRIANGSPQGITNPRIP 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20892132 20898772 - Hsped.02g15720.1 Hepe02g1572 563073

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1572 781 CDD ARID 596 694 - -
Hepe02g1572 781 MobiDBLite consensus disorder prediction 543 570 - -
Hepe02g1572 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 764 IPR013083 -
Hepe02g1572 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 776 IPR042293 -
Hepe02g1572 781 CDD PHD_ARID4_like 704 755 - -
Hepe02g1572 781 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677(InterPro)
Hepe02g1572 781 Gene3D - 591 694 IPR036431 GO:0003677(InterPro)
Hepe02g1572 781 SMART ARID_2 591 694 - -
Hepe02g1572 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677(InterPro)
Hepe02g1572 781 MobiDBLite consensus disorder prediction 549 570 - -
Hepe02g1572 781 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
Hepe02g1572 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1572 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1572 Hepe-Chr2:20892132 Hepe03g1390 Hepe-Chr3:70531556 0.0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g0356 . 100 440 ARID Transcription Factor Family AT1G04880 58.7 3.5e-105 379.0
Hepe01g2371 . 135 414 ARID Transcription Factor Family AT1G20910 66.4 4.6e-101 365.2
Hepe06g0848 . 236 502 ARID Transcription Factor Family AT1G20910 60.7 3.7e-90 328.9
Hepe01g2311 . 16 309 ARID Transcription Factor Family AT1G76110 66.8 1.9e-111 399.4
Hepe01g2371 . 134 444 ARID Transcription Factor Family AT1G76510 72.8 3.9e-125 445.3
Hepe06g0848 . 223 532 ARID Transcription Factor Family AT1G76510 62.5 1.3e-109 393.7
Hepe02g1572 . 2 770 ARID Transcription Factor Family AT3G43240 59.0 7.6e-262 900.2
Hepe03g1390 . 2 772 ARID Transcription Factor Family AT3G43240 57.7 1.5e-257 885.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55051 PF01388 ARID 8.00E-14 CL0123 Hepe TR