Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1572 ATGATGCTTCATTCCGTAGGAGCTGCTAGACAAACTTGTAGCTTACTTGCTGTCACCTGCGGAAGTGTACCTAAAGTAAAATGCGAGGAGGATTTTGCTGAGGATAAGTTGGAATACCCTTTTCCAGAATTAGTTTCTTCCGGACGATTGGAGGTTCGAGTTCTGTCGAATCCAAGCAAGGATGAATTTAGTAGAGTTGTAGAATCATGTCAACCGAGCTTCGTCTACTTGCAAGGGGAACAACTCGAAAATGATGAAATTGGGTCTTTGGTTTGGAATGGTGTTGATTTGTCTCTTGAAGATTTATGTGAACTATTCAATACTACACTACCAACCACAGTGTATTTAGAAGTCCCAAATGGAGGCAGAATAGCTGAGGCTCTTTATTCTAAGGGAGTTCCTTATGTCATGTATTGGAACAACACATTTTCATGTTATGCTGCAGCTCATTTTCGTAATGCATTGCTCTCAGTGGTGCAGAGTTCATCTACTCATACATGGGATGCTTTTCAGCTTGCACATGCTGCTTTTAGGCTTCATTGTGTGGGGAATGCTGACAATATTAGGAGTGATCTAGAGCCACAACTTATTGGGGAACCTCTACAGATTAACGTTGAACCCCTCGAGATAGATGAAGGTGAAGGTGAAGGTGAAGGTGAAGATGAAGATGGTTCTCTAGGAACCCTCCCTGCCATAAGCATACATGATAATAATGTGACCGTGAAATTTCTTATCTGTGGAGTGCCTTGCACACCGGATTCGTGCTTATTGACATCATTGGAGGATGGCCTTAATGCCCTTTTGAACATTGAAATACGTGGGAGTAAACTTCAGGGAAAGTTTAGTGCTCCTCCGCCACCTCTTCAAGCAGGATCCTTTTCTCGTGGTGTCGTGACAATGCGATGTGATATGGTGACCTGTAGTTCAGCCCATATCTCAGTATTGGTGTCCGGTAGTGCTCATACTTGTTTTGATGATCAGCTGTTGGAAAAACATATCAAACATGAGATTATTGAAAATAGCCAATTAGTTCATGCCATGCATGAATGTGAAGGCAACAAACATCACATGCACGAGCCTCGAAAATCTGCTTCAGTAGCTTGTGGGGCATCAGTATTTGAGGTTTCCATGAAGGTTCCCGCTTGGGCATCACAGGTCTTGAGGCAACTAGCACCTGATATGTCGTATCGGAGTTTAGTTGCACTTGGCATTGGAGGAGTTCAGGGTTTGCCTGTTGCTTCTTTCGAGAAAGAGGATGCTGAGCGGTTGCTCTTCTTTTGTTCAAGTGATGAAAATGATAAACATTCAGATCAGTTGCTTTTAACTGTGCTGCCCAGCTGGTTTAAACCACCTACTCCTAGTAGAAAGAGAGTGGAACCAAGCCTAGGAATAAGGAACACTCTTTCACATGACAATCTTGCATATGCAAATATCCCTTCCATTAGAAGAGTAGGTGGAGAGGAGCCTGCACCAATGAATGGGTTTAAGGCACCTTTACTCCCAGCTAGGAAAAAATTAAAAGTAGCCACCATGAGGCCGATTCCACGTGTGTATCGGAATAAAATGACACCTTTCTCTGGATTGACTGAAGCAGATGGGAACAATGGAGGCCAACCCAAGGCTAGTTTTCCCGTCATTACCCCGTCAAAGCATGTAACCGGAGGATCAACTTCTGCAACTCAAAGAAAATCTTTTTCAAGCTCATCTCAGTCTAAGCAGATTATTTCCTTAAACCCACTACCTTTAAAGAAACATGGTTGTGGAAGAAACCCAATTCAAGATTGCTCTGAGGAGGAGTTCTTGAAAGATGTTATGGAGTTTTTACTACTTAGAGGACATTCACGACTTATTCCTCAAGGTGGATTTGACGAGTTCCCAGATGCCATACTCAATGGGAAGCGTCTTGACCTCTATAACTTGTATAAGGAGGTGGTCACTCGAGGAGGCTTTCATGTTGGCAATGGTATCAACTGGAAGGGGCAGATCTTCTCTAAGATGCACAATTACACAATGACCAATAGAATGACTGGTGTTGGAAATACACTGAAACGACATTATGAGACTTACCTTCTAGAATATGAATTGGCTCATGATGATGTAGATGGAGAATGCTGCCTTTTGTGTCACAGTAGTGCAGCAGGGGATTGGGTGAACTGTGGTATCTGTGGTGAATGGGCTCATTTCGGGTGCGACCGGAGGCAGGGTCTCGGTGCATTTAAGGATTATGCCAAAACAGATGGGCTAGAGTATGTTTGTCCACATTGTAGCATTACAACTTACAAGAAGAAACCACACAGAATAGCAAACGGGTCTCCGCAAGGAATAACGAATCCACGGATACCTTGA 2346 43.35 MMLHSVGAARQTCSLLAVTCGSVPKVKCEEDFAEDKLEYPFPELVSSGRLEVRVLSNPSKDEFSRVVESCQPSFVYLQGEQLENDEIGSLVWNGVDLSLEDLCELFNTTLPTTVYLEVPNGGRIAEALYSKGVPYVMYWNNTFSCYAAAHFRNALLSVVQSSSTHTWDAFQLAHAAFRLHCVGNADNIRSDLEPQLIGEPLQINVEPLEIDEGEGEGEGEDEDGSLGTLPAISIHDNNVTVKFLICGVPCTPDSCLLTSLEDGLNALLNIEIRGSKLQGKFSAPPPPLQAGSFSRGVVTMRCDMVTCSSAHISVLVSGSAHTCFDDQLLEKHIKHEIIENSQLVHAMHECEGNKHHMHEPRKSASVACGASVFEVSMKVPAWASQVLRQLAPDMSYRSLVALGIGGVQGLPVASFEKEDAERLLFFCSSDENDKHSDQLLLTVLPSWFKPPTPSRKRVEPSLGIRNTLSHDNLAYANIPSIRRVGGEEPAPMNGFKAPLLPARKKLKVATMRPIPRVYRNKMTPFSGLTEADGNNGGQPKASFPVITPSKHVTGGSTSATQRKSFSSSSQSKQIISLNPLPLKKHGCGRNPIQDCSEEEFLKDVMEFLLLRGHSRLIPQGGFDEFPDAILNGKRLDLYNLYKEVVTRGGFHVGNGINWKGQIFSKMHNYTMTNRMTGVGNTLKRHYETYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSITTYKKKPHRIANGSPQGITNPRIP 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20892132 20898772 - Hsped.02g15720.1 Hepe02g1572 563073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1572 781 CDD ARID 596 694 - -
Hepe02g1572 781 MobiDBLite consensus disorder prediction 543 570 - -
Hepe02g1572 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 764 IPR013083 -
Hepe02g1572 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 776 IPR042293 -
Hepe02g1572 781 CDD PHD_ARID4_like 704 755 - -
Hepe02g1572 781 SUPERFAMILY ARID-like 594 709 IPR036431 GO:0003677(InterPro)
Hepe02g1572 781 Gene3D - 591 694 IPR036431 GO:0003677(InterPro)
Hepe02g1572 781 SMART ARID_2 591 694 - -
Hepe02g1572 781 ProSiteProfiles ARID domain profile. 594 698 IPR001606 GO:0003677(InterPro)
Hepe02g1572 781 MobiDBLite consensus disorder prediction 549 570 - -
Hepe02g1572 781 SUPERFAMILY FYVE/PHD zinc finger 690 758 IPR011011 -
Hepe02g1572 781 Pfam ARID/BRIGHT DNA binding domain 597 694 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1572 Hepe-Chr2:20892132 Hepe03g1390 Hepe-Chr3:70531556 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55051 PF01388 ARID 8.00E-14 CL0123 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1572 - - - 0.0