Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1577 ATGGATTCCGTCAAGTCCTTCAAGGGCTACGGCAAGGTCGACGAGCTCGAACAGGAAGCTTTCCGGAAGAAGACTCGCCGCCGAATCATTATTCTTGCTCTCTCTATTGTTCTTCTAATTGCTGTCGTCATCGGCGCCGTCGTTGGAATCGTCATTCACAAACGGAACTCTTCGTCTTCATCGGCGACGACTTCGCCTCCTCCGACCGATCTAACTCCGGCCGCCTCACTCAAAACTCTCTGCAGTGTAACTCAGTATCCGAGTTCGTGCCAGTCCTCTCTCGGAAACTCCAACACTACCAATCCGGTATTTCTCTTCAAGCTTTCTCTCCGAGTCGCCACCGATTCGCTCTCTAAACTCGCCGATTACTCCTCCAAACTCAATTCCAGTACCACCGATCCGAATCTCAGAGCCGCAATCGGAATCTGCCGGAGTGTTTTTGAAGACGCCATCGAGACACTAAACGACACCGTTTCGTCCATGGAAGTGGATCGAAACGGTGAGAAGTTTCTGTCGCCGTCGAGGATTGAAGATCTGAAAACCTGGCTGACCACCACAATCACCGACCAAGAAACCTGCCTCGACGCCGTTCGAGATCTGAACCAGACGGCGATTCTCCGAGAATTGGAAACGGCAATGGCGAATTCGACCGAGTTCACGAGTAATAGTTTAGCGATTGTATCGAAGGTGTTGGGGGTGTTGGCGAATTTCAACTTCCCAATCCACCGGAAGCTGATGGGATTCCCGGAGTGGGTGAGGTCCGGCGACCGGAGGGTTGTGGAGGAGACGAATGTGACGGCGCATGTGACGGTGTCGAAGGATGGGAAAGGGGACTTCACGACGATCAAAGACGCCGTAGCGGCGGTGCCAAAGAAGAGTAAAGAACGATTCGTGATATATGTAAAAGAAGGAATATACGAAGAGAATGTGATTCTGGATAAGAGCAAGTGGAATGTTATGATGTATGGAGATGGCAGAACCAAAACCATTGTTTCCGGCCACCTGAACTTTATCGACGGCACTCCCACCTTCTCCACCGCCACTTTCGCTGTGGCTGGCAAAGGGTTCATTGGCAAGGACATGGGTTTCATCAACACGGCCGGCCCAGCCAAGCATCAGGCCGTCGCCTTCCGGTCAGGCTCCGACCTCTCCGTAATGTCCGGATGCTCATTTGACGGCTATCAAGACACACTCTACGCTCATTCCAACCGCCAATTCTACCGCGACTGCGACATCACCGGCACCATCGACTTCATCTTCGGCAGCGCCGCCGTCGTGTTCCAGAACTGCAACATCCGGCCGAGACAGCCACTTCCCAACCAGTTCAACACCATCACAGCCCAAGGCAAAAAGGACATCAACCAAAACTCCGGCATTTCCATTCAGAAATGCACTTTTTCGGCCTACAACGACAGTCTCGTCGCCCCAACTTACTTGGGGAGGCCATGGAAGGAGTTTTCCACCACCGTGATTATGCAGTCGGAGATCGGAGCATTCCTGCAGCCGGTCGGGTGGAAGGAATGGATCAGCGGGCAGGACCCACCCAGCACTATATTTTACGGCGAGTATCAGAACAGTGGGCCTGGATCAAACGTGGACAAGAGGGTTAAATGGGCCGGTTACAGGCCCAGTCTTACTGACGCCGAGGCCGGAAAGTTCACCGTCGGGACATTCCTCAACGGCCAGGATTGGTTGCCGGCGACGAGTGTAAGATTTGAAACATCCTTGTGA 1731 53.09 MDSVKSFKGYGKVDELEQEAFRKKTRRRIIILALSIVLLIAVVIGAVVGIVIHKRNSSSSSATTSPPPTDLTPAASLKTLCSVTQYPSSCQSSLGNSNTTNPVFLFKLSLRVATDSLSKLADYSSKLNSSTTDPNLRAAIGICRSVFEDAIETLNDTVSSMEVDRNGEKFLSPSRIEDLKTWLTTTITDQETCLDAVRDLNQTAILRELETAMANSTEFTSNSLAIVSKVLGVLANFNFPIHRKLMGFPEWVRSGDRRVVEETNVTAHVTVSKDGKGDFTTIKDAVAAVPKKSKERFVIYVKEGIYEENVILDKSKWNVMMYGDGRTKTIVSGHLNFIDGTPTFSTATFAVAGKGFIGKDMGFINTAGPAKHQAVAFRSGSDLSVMSGCSFDGYQDTLYAHSNRQFYRDCDITGTIDFIFGSAAVVFQNCNIRPRQPLPNQFNTITAQGKKDINQNSGISIQKCTFSAYNDSLVAPTYLGRPWKEFSTTVIMQSEIGAFLQPVGWKEWISGQDPPSTIFYGEYQNSGPGSNVDKRVKWAGYRPSLTDAEAGKFTVGTFLNGQDWLPATSVRFETSL 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20936185 20939808 - Hsped.02g15770.1 Hepe02g1577 563078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1577 576 Gene3D - 262 576 IPR012334 -
Hepe02g1577 576 CDD PMEI-like_3 79 229 - -
Hepe02g1577 576 SMART PMEI_2 72 226 IPR006501 GO:0004857(InterPro)
Hepe02g1577 576 FunFam Pectinesterase 73 231 - -
Hepe02g1577 576 NCBIfam pectinesterase inhibitor domain 60 229 IPR006501 GO:0004857(InterPro)
Hepe02g1577 576 FunFam Pectinesterase 262 576 - -
Hepe02g1577 576 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 230 IPR035513 -
Hepe02g1577 576 Pfam Plant invertase/pectin methylesterase inhibitor 76 226 IPR006501 GO:0004857(InterPro)
Hepe02g1577 576 PANTHER PECTINESTERASE 28 567 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe02g1577 576 Pfam Pectinesterase 268 561 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe02g1577 576 ProSitePatterns Pectinesterase signature 2. 412 421 IPR033131 -
Hepe02g1577 576 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 230 IPR035513 -
Hepe02g1577 576 SUPERFAMILY Pectin lyase-like 266 572 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1577 Hepe-Chr2:20936185 Hepe07g1708 Hepe-Chr7:58901776 2.70e-150 dispersed
Hepe02g1577 Hepe-Chr2:20936185 Hepe02g1578 Hepe-Chr2:20952047 1.35e-122 tandem
Hepe07g2522 Hepe-Chr7:69546180 Hepe02g1577 Hepe-Chr2:20936185 3.47e-26 transposed
Hepe02g1577 Hepe-Chr2:20936185 Hepe03g1383 Hepe-Chr3:70466893 1.49e-126 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1577 - - - 0.0