Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1578 ATGGCACAAACCGGGCCGAAAAAGAAGAAGCTCTTCATAGTAGCCCTCTCCGCGACGCTCCTCTTGGCCGGCGTCATCGGCAGCATCGCCGACGAAGAGGAGGAGCGCGTGAGAAGCACGTGCGCGGTGACGCTTTACCCAGAGCTGTGCCAGTCGACAATATCCAGCGGCGTGGGAAGTAGCAGTTCAAAAGACGTAATTCAAAGGGCGGTGAATATTACGATTGATGCAGTGAAGCATAACTATAAAAGCGTGAAGAAGTTGGTTACGACGATGAAGAATCCGACGAAGCGAGAGAGAATCGCTCTCCATGACTGTCTGGAGACTGCAGAGGAGACGCTGAGAGAACTGTATGATGTGGTGGAGGATCTCCATGAGTATCCTAACAACAAATCTCTCTCGCACTACGCCGATGACCTCAAAACCTTGCTCAGTTCCGCCATTACTAATCAGGAAACATGTCTGGACGGATTCTCACACGACAAAGCCGACAAAAAGGTAAGAAAGTCATTAGAAGCAGGCCAAATTCACGTCGAAAAGTTATGCAGCATTGCATTAGCCTTGATCAAAAATCTCACCGACACCGACATAGCCAATAATCACAACAACAATAACCACCTCAACAGAAAGCAGCTGACCGAGGACGATATTAACTGGCCCCATTGGATGTCGGCCGGTGACCGGAGGCTTTTGCAAGCCTCGTCCTCGGCCACCCCCGACACGGTCGTGGCAGCCGACGGTAGCGGCAACTTCCGGACCGTGTCGGCGGCGGTTGCGGCTGCCCCGGATAGGAGTAGCTCGAGATATATAATAAGAATAAAGGCCGGGGTTTATAGAGAAAATGTGAATGTGCCTAGTAGTAAGAGGAATATTATGTTTTGGGGAGATGGAAGAACCACCACTATCATCACCGGGAGCAGAAATGTCGTCGACGGCAGTACAACCTTCAATTCCGCCACCGTTGCGGCGGTGGGAGAAAGATTCTTAGCGAGAGACATTACCTTCCAGAACACCGCCGGTCCATCAAAGCACCAAGCGGTGGCTCTCCGCGTCGGCTCCGATCTCTCCGCCTTTTACCGCTGCGACATGCTCGCCTATCAGGACACTCTCTACGTCCACTCCAACCGCCAATTCTACGTCAGCTGCATCATCGTCGGCTCCGTCGACTTCATCTTCGGAAACGCCGCCGCCGTCATCCAGAACTCCGACATCCACGCCCGCCGCCCCAATCCCGGCCAGAAAAACATGGTGACTGCACAGGGGAGAACCGACCCAAATCAGAACACCGGAATCGTAATCCAGAAATGCCGGATCGGAGCCACCTCCGATCTGCAGGCGGTGATCAGAAATTTCCCGACGTTTCTGGGGCGGCCGTGGCAGAGATATTCGAGGACGGTGGTTATGCAGACGAGTATTAGCAATGTGATTGATCCGGCGGGTTGGCACGTGTGGAGTGGGAATTTTGCGCTTGATACTCTGTTTTATGGTGAGTATCAGAATAGTGGGGCCGGTGCTGATACGTCGAGGAGAGTGACGTGGAAGGGGTATAAGGTTATTACCAGTGCGGCGGAAGCTGAGGGCTTCACGGCGGGGAAGTTCATCGGCGGCGGAACCTGGCTGAGCTCCACCGGTTTCCCATTCTCACTTGGGCTGTAA 1656 53.5 MAQTGPKKKKLFIVALSATLLLAGVIGSIADEEEERVRSTCAVTLYPELCQSTISSGVGSSSSKDVIQRAVNITIDAVKHNYKSVKKLVTTMKNPTKRERIALHDCLETAEETLRELYDVVEDLHEYPNNKSLSHYADDLKTLLSSAITNQETCLDGFSHDKADKKVRKSLEAGQIHVEKLCSIALALIKNLTDTDIANNHNNNNHLNRKQLTEDDINWPHWMSAGDRRLLQASSSATPDTVVAADGSGNFRTVSAAVAAAPDRSSSRYIIRIKAGVYRENVNVPSSKRNIMFWGDGRTTTIITGSRNVVDGSTTFNSATVAAVGERFLARDITFQNTAGPSKHQAVALRVGSDLSAFYRCDMLAYQDTLYVHSNRQFYVSCIIVGSVDFIFGNAAAVIQNSDIHARRPNPGQKNMVTAQGRTDPNQNTGIVIQKCRIGATSDLQAVIRNFPTFLGRPWQRYSRTVVMQTSISNVIDPAGWHVWSGNFALDTLFYGEYQNSGAGADTSRRVTWKGYKVITSAAEAEGFTAGKFIGGGTWLSSTGFPFSLGL 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 20952047 20957019 - Hsped.02g15780.1 Hepe02g1578 563079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1578 551 ProSitePatterns Pectinesterase signature 1. 265 284 IPR018040 -
Hepe02g1578 551 Pfam Pectinesterase 240 536 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe02g1578 551 SMART PMEI_2 32 188 IPR006501 GO:0004857(InterPro)
Hepe02g1578 551 PANTHER PECTINESTERASE 12 542 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe02g1578 551 FunFam Pectinesterase 33 193 - -
Hepe02g1578 551 FunFam Pectinesterase 234 551 - -
Hepe02g1578 551 Pfam Plant invertase/pectin methylesterase inhibitor 37 188 IPR006501 GO:0004857(InterPro)
Hepe02g1578 551 ProSitePatterns Pectinesterase signature 2. 384 393 IPR033131 -
Hepe02g1578 551 Gene3D - 234 551 IPR012334 -
Hepe02g1578 551 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 194 IPR035513 -
Hepe02g1578 551 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 193 IPR035513 -
Hepe02g1578 551 CDD PMEI-like_3 39 193 - -
Hepe02g1578 551 SUPERFAMILY Pectin lyase-like 236 550 IPR011050 -
Hepe02g1578 551 NCBIfam pectinesterase inhibitor domain 14 193 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1578 Hepe-Chr2:20952047 Hepe03g1383 Hepe-Chr3:70466893 1.82e-264 dispersed
Hepe02g1577 Hepe-Chr2:20936185 Hepe02g1578 Hepe-Chr2:20952047 1.35e-122 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1578 K01051 - csv:101207996 867.84