Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1584 ATGGTGAGGAAATGGAGGTGGGGAGAGCCGGTGCTGCTAATCAGTATCTGCATTTTGGGATGGAGAGCCAGTTTTATCAATGGAGCCACGGATCCAGGAGATGTGTCTGCTCTAAATGCCATGTATAGTAGTTTAAACTCGCCTCCAATCCTAACACAATGGAGTTCAACTGGTGGAGATCCATGTGGGCAAATTTGGAAAGGCATTACTTGCTCAGGCCCACGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTGCTGGATCTCTGGGATACCAGCTCTCAAGTTTGACATCTCTAATTAATCTAGATGTGAGTTTCAACAATCTTGGACCTGACATACCTTATCAACTCCCTCAAAACTTGCAAAAACTAAACTTTGGATGGAATAACTTCAGTGGAAGCATCCCCTATTCTATTTCTCAAATGAGTTTGCTTATTTCCTTGAACATCAGCCATAATCAGCTTCGGAATCAAGTGAATGATATGTTCTGGAATCTTTCTTCCCTGTCCATGTTGGACGTCTCTTTCAATTTTCTGTCAAGTGCCCTCCCCCAGAGTTTTAGCAACCTTACCAGTATGAACTCAATGTTTCTGCAAAACAACCAACTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCACTACAAATCTTGAATGTCGAGAACAACCATTTTACTGGATGGGTTCCTGAACGATTGAAGACCATAAATATTCAGGAGGGTGGCAATTCTTGGAGCTTTGGGCTTGCACCTCCACCTCCTCCAGCCAACCAAAATTACAGATTTCACAAGCCTGGGAACAATTACAGCCCACTGAGTAGTAATGCTGCTGGTGGAGATAGCAGTAGATCAGGAATCAGTGGTGGCGCCATTGCTGGAATTCTTATATCTGTGCTAGTAGTGGGAGCAGTACTAGCATATTTGTTTGTAAAGCGAAAAACCAAGAAGTCATCCACAGACATAGAAAAGCAAAAGCTTGGGAACCTGCCTAGCGTATTGCCTGCTGCGAATGAAGTGCAAGATTCATTGGCAGAGATGAAGCTTATTCATACTTCATCATCATTTGATGCAAAAGCATTGGATTCTCCTGCTTCAATCAATCTTAAACCACCACCTGTTGATCGTCATAAATCATTTGATGACAATGATACATCAAAGATACCTGTTGTGAAGAAGACCAACGTGGCCCCTCCGATAAGTGTGAAGTCGTATTCAATAGCAGATCTGCAAATGGCTACAGGCAGTTTCAACGTAGAAAACCTTCTTGGTGAGGGATCACTTGGACGCGTTTATCGGGCTCAGTTCGATGATGGGAAGGTCCTTGCTGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAATTGTTGGAAGATTTTACAGAGATCGTTGCTAATGTATCTCAGTTGCATCATCCTAATGTAACCGAGCTAATGGGTTATTGCTCAGAGCATGGTCTACATTTGCTACTACATGAGTTCCATAAGAATGGTTCACTACATGATTTCTTGCATATATCAGATGAATATAGCAAGCCACTGACTTGGAACTCACGTGTCAAGATCGCTTTGGGGACGGCCCGTGCATTGGAGTACCTACATGAAATCTGTGCACCATCAGTTCTTCACAGAAATATTAAGTCAGCCAATATCTTACTGGATGCTGAACTTAATCCTCATCTCTCCGATTGTGGCCTTGCTAGCTTTATAACCAATCTAGAACAGGCATTAGATCAGCAGGCAGGATCGGGATACAGTGCCCCAGAGGTTACCATGTCTGGTCAATATACATTAAAAAGTGATGTATACAGCTTTGGAGTGGTGATGTTAGAACTTCTAAGCGGGCGTCAGCCGTTTGATAGTTCAAGGCCACGAGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTCCATGACATTGATGCCTTGACGAAAATGGTTGATCCCGCACTTAAAGGGCTCTACCCAGTCAAGTCCCTCTCGAGATTTGCAGACGTTGTGGCTCTCTGCGTCCAGCCCGAGCCCGAGTTCAGACCACCCATGTCAGAGGTGGTGGAAGCTTTGGTTCGACTTGTGCAGCGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCACGGATCATCTTTTAGAACTGATGATCCTGATGCACATGAAACATCTTAA 2169 44.08 MVRKWRWGEPVLLISICILGWRASFINGATDPGDVSALNAMYSSLNSPPILTQWSSTGGDPCGQIWKGITCSGPRVTEISLSGLGLAGSLGYQLSSLTSLINLDVSFNNLGPDIPYQLPQNLQKLNFGWNNFSGSIPYSISQMSLLISLNISHNQLRNQVNDMFWNLSSLSMLDVSFNFLSSALPQSFSNLTSMNSMFLQNNQLSGTIDVLANLPLQILNVENNHFTGWVPERLKTINIQEGGNSWSFGLAPPPPPANQNYRFHKPGNNYSPLSSNAAGGDSSRSGISGGAIAGILISVLVVGAVLAYLFVKRKTKKSSTDIEKQKLGNLPSVLPAANEVQDSLAEMKLIHTSSSFDAKALDSPASINLKPPPVDRHKSFDDNDTSKIPVVKKTNVAPPISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFDDGKVLAVKKIDSAAFPRELLEDFTEIVANVSQLHHPNVTELMGYCSEHGLHLLLHEFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEICAPSVLHRNIKSANILLDAELNPHLSDCGLASFITNLEQALDQQAGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRQPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDPDAHETS 722
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21031314 21040708 - Hsped.02g15840.1 Hepe02g1584 563085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1584 722 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 257 - -
Hepe02g1584 722 Gene3D Ribonuclease Inhibitor 31 256 IPR032675 -
Hepe02g1584 722 SUPERFAMILY Protein kinase-like (PK-like) 398 689 IPR011009 -
Hepe02g1584 722 Gene3D Transferase(Phosphotransferase) domain 1 496 712 - -
Hepe02g1584 722 PANTHER LEUCINE RICH REPEAT KINASE 2 292 691 IPR051420 -
Hepe02g1584 722 MobiDBLite consensus disorder prediction 707 722 - -
Hepe02g1584 722 Gene3D Phosphorylase Kinase; domain 1 379 494 - -
Hepe02g1584 722 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 495 703 - -
Hepe02g1584 722 CDD STKc_IRAK 423 692 - -
Hepe02g1584 722 Pfam Leucine Rich Repeat 121 143 IPR001611 GO:0005515(InterPro)
Hepe02g1584 722 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 381 494 - -
Hepe02g1584 722 SMART LRR_typ_2 167 190 IPR003591 -
Hepe02g1584 722 SMART LRR_typ_2 97 121 IPR003591 -
Hepe02g1584 722 SMART LRR_typ_2 143 166 IPR003591 -
Hepe02g1584 722 SUPERFAMILY L domain-like 30 234 - -
Hepe02g1584 722 ProSiteProfiles Protein kinase domain profile. 417 692 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1584 722 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Hepe02g1584 722 Pfam Protein tyrosine and serine/threonine kinase 419 689 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g1584 722 MobiDBLite consensus disorder prediction 701 722 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1584 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0159 Hepe-Chr2:1705438 Hepe02g1584 Hepe-Chr2:21031314 3.02e-129 dispersed
Hepe02g1584 Hepe-Chr2:21031314 Hepe07g1580 Hepe-Chr7:54699284 6.96e-183 dispersed
Hepe02g1584 Hepe-Chr2:21031314 Hepe03g1378 Hepe-Chr3:70423070 9.06e-269 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe07g1580 . 389 682 Strubbelig Receptor Gene Family AT1G11130 53.7 2.1e-85 313.9
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe02g1584 . 11 715 Strubbelig Receptor Gene Family AT1G53730 60.9 7.4e-214 740.7
Hepe03g1378 . 12 710 Strubbelig Receptor Gene Family AT1G53730 61.4 1.8e-191 666.4
Hepe02g1584 . 13 710 Strubbelig Receptor Gene Family AT3G14350 51.5 1.2e-184 643.7
Hepe03g1378 . 21 714 Strubbelig Receptor Gene Family AT3G14350 53.3 8.5e-167 584.3
Hepe07g1580 . 150 712 Strubbelig Receptor Gene Family AT4G22130 64.0 4.8e-176 614.8
Hepe02g1584 . 394 722 Strubbelig Receptor Gene Family AT4G22130 62.8 1.1e-119 427.6
Hepe03g1378 . 403 716 Strubbelig Receptor Gene Family AT4G22130 64.9 1.9e-116 416.8
Hepe02g0159 . 480 775 Strubbelig Receptor Gene Family AT4G22130 61.3 6.2e-107 385.2
Hepe04g1828 . 439 752 Strubbelig Receptor Gene Family AT4G22130 56.2 6.8e-98 355.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72567 PF07714 PK_Tyr_Ser-Thr 7.40E-41 CL0016 Hepe PK