Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1586 ATGGGATCAATAGAGGAGAAAACAAATTACCTATCAGACGAAGAAATTCCATTGAAGTTGTCATCACCGGTCGCCAAAAACGTATTGCATAGCTTTGATTGTGAGACGGCTCATGTGTCCCCTGATGATAAAAGATGGTGGAAGACTAACAACATTCGTATTAGACCTCTTAGAAGTGCTTATATAGTGTTGGTTAGAGCAAAGATCAACGTGCTACTACCTTTTGGTCCTTTGGCAATTCTGCTACATTATGTAACCGGAAAGCATGGATTGGTCTTCTTTTTCACTTTACTTGGAATTACACCTTTGGCAGAACGTCTTGGTTATGCAACTGAGCAGCTTGCTTTCTACACTGGACCGACAGTTGGTGGTCTTTTGAATGCAACATTTGGAAATGCAACCGAAATGATTATATCAATTTATGCGTTAAAGAGTGGGATGATTAGGGTTGTTCAGCAGTCATTACTGGGGTCGATCTTGTCAAATATGCTGCTAGTGCTTGGTTGCGCTTTCTTCACTGGTGGGATTGTTCATCATACGAAGGTGCAGGTTTTCAATAAGGGTGCTGCTGTTGTGAATTCAGGATTGTTGTTGATGGCTGTTATGGGAACAACTTTTCCAGCTGTGCTTCATTTCACCCACACAGAACTTCATTCTGGAGAGTCAGCATTGTCTCTTTCAAGATTTAGCAGTTGTATAATGTTAATTGCATATGCAAGCTACCTTTTCTTTCAACTAAAAATTCAGCATAATCTCTATGGTCCTCTTGATGGGGAAGGCAATGATGAAGTTGAGGATGATACTGAGATTTATGCTTGGGAAGCAATTGGATGGCTTGCTATCTTGACTGTATGGGTATCTGTTTTATCTGGATACCTGGTCGATGCTATCCAGGGAGCATCTGAATCATTAAATTTGCCAGTGGCTTTTATAAGTGTAATTTTGTTGCCAATTGTTGGAAATGCTGCCGAACATGCGAGTGCAATCATGTTTGCCATGAAGGATAAGCTAGACATCACCCTTGGAGTTGCTATTGGATCATCTACACAAATATCCATGTTTGTGATCCCGTTTTGCGTGGTAGTTGGATGGTGCATGGGAGAACCAATGGACTTGAACTTTAAACTCTTTGAGACAGCAAGTTTGTTCATCACTGTGCTAGTGGTGGCCTTTATGTTGCAGGAGGGGACATCAAATTATTTCAAAGGACTAATGCTTATTCTATGCTACCTCATAGTGGCAGCCAGTTTTTTTGTACATGTTGACCCTAAAACTGCAAGTTGGTACTGGAACTTTACTGCAAGCTCAACTTTAGCATTGCATGAGTTCTCAAACCACCATTGCTTCAGTTCGTTGGAACCTGGAAACATTAGAGGAGGACTCACACAAATGGTTTGGACTTCAGATGGAGTTTAG 1416 41.1 MGSIEEKTNYLSDEEIPLKLSSPVAKNVLHSFDCETAHVSPDDKRWWKTNNIRIRPLRSAYIVLVRAKINVLLPFGPLAILLHYVTGKHGLVFFFTLLGITPLAERLGYATEQLAFYTGPTVGGLLNATFGNATEMIISIYALKSGMIRVVQQSLLGSILSNMLLVLGCAFFTGGIVHHTKVQVFNKGAAVVNSGLLLMAVMGTTFPAVLHFTHTELHSGESALSLSRFSSCIMLIAYASYLFFQLKIQHNLYGPLDGEGNDEVEDDTEIYAWEAIGWLAILTVWVSVLSGYLVDAIQGASESLNLPVAFISVILLPIVGNAAEHASAIMFAMKDKLDITLGVAIGSSTQISMFVIPFCVVVGWCMGEPMDLNFKLFETASLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPKTASWYWNFTASSTLALHEFSNHHCFSSLEPGNIRGGLTQMVWTSDGV 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21052748 21058011 - Hsped.02g15860.1 Hepe02g1586 563087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1586 471 FunFam Vacuolar cation/proton exchanger 263 419 - -
Hepe02g1586 471 NCBIfam calcium/proton exchanger 72 418 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Hepe02g1586 471 Pfam Sodium/calcium exchanger protein 91 246 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1586 471 Pfam Sodium/calcium exchanger protein 275 417 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe02g1586 471 FunFam Vacuolar cation/proton exchanger 120 259 - -
Hepe02g1586 471 Gene3D - 260 419 IPR044880 -
Hepe02g1586 471 Gene3D - 120 259 IPR044880 -
Hepe02g1586 471 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 37 423 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1586 Hepe-Chr2:21052748 Hepe08g0368 Hepe-Chr8:3303315 8.89e-189 dispersed
Hepe02g1586 Hepe-Chr2:21052748 Hepe04g0753 Hepe-Chr4:61536010 3.52e-106 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1586 K07300 - csv:101219432 784.252