Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1587 ATGAGACCGCTTCAGCCGCCTCACGGTGCCAATCCGGCCACCGATCGTCCCCGTCGCCGCCCGAATCTAACCCTTCCTATTCCCCTTCATCTTCCCCAGCGGGACAATACATCTCTGGCTGTTCCTCTCCCTCTGCCTCCGACTTCCTCCAACGCCGCTCCTCCTTCCACCAGTCAACTCCACAACGGCAACCGCCCACCACAGCCGGATCCTCATCCTCAGCCTCAGCCACACCACCATCAAACCTTCAGCCTCTCCGAGTTCGAGCGAGTCAGCCGAATCGGAAGTGGAGCCGGAGGTACCGTTTACAAAGTCATTCACCGTCCCACCAACCGCGTATATGCTCTCAAGGTCATTTACGGCAACCACGAGGACGCGGTTCGGCTCCAGATGTGCCGCGAGGTTGAGATCCTCCGCGACGTTGACAATCCCTATGTCGTCAAGTGCCATGATATGTTCGATCACAACGGCGAAATCCAAGTTCTCCTTGAATTCATGGATCGGGGATCTTTGGAAGGTACGCACATCCCTCAGGAACAACATCTCTCCGATTTGGCTCGACAGATTCTCAGCGGCCTTGCTTATCTCCATAGCCGCCGTATCGTTCATCGCGACATCAAACCCTCGAATCTCCTTATTAATTCCCGGAGGCAGGTTAAGATCGCTGATTTCGGCGTCGGTCGAATCTTGGAACAGACGATGGATCCTTGCAATTCCTCGGTTGGAACTATTGCGTACATGAGCCCTGAGAGAATCAATTCCGATCTAAATCAGGGTCAGTACAATGGGTATGCAGGGGATATTTGGAGCTTTGGGGTTAGCATATTGGAATTCTATCTCGGACGGTTTCCTCTTGCTGTGGAGAGACCTGGGGATTGGGCTAGCTTGATGTGTGCTATATGTATGGCTCAGCCACCGGAGGCGCCGCCCACTGCGTCGCCGGAGTTTCGACATTTTATTGCTTGTTGTTTGCAGAGAGAAGCTCGGAAGAGATGGACTGCAGCTGCATTACTGGAACATGCGTTCATAACGAAGAAAAATGGAGCCACCCAGTACCAGAATCCGCCGGCTCATCACCAGAATCTTCGTCAACTATTACCTCCGCCGCCCCTTCATCCTTCCAGCCTTTCCTGA 1134 53.7 MRPLQPPHGANPATDRPRRRPNLTLPIPLHLPQRDNTSLAVPLPLPPTSSNAAPPSTSQLHNGNRPPQPDPHPQPQPHHHQTFSLSEFERVSRIGSGAGGTVYKVIHRPTNRVYALKVIYGNHEDAVRLQMCREVEILRDVDNPYVVKCHDMFDHNGEIQVLLEFMDRGSLEGTHIPQEQHLSDLARQILSGLAYLHSRRIVHRDIKPSNLLINSRRQVKIADFGVGRILEQTMDPCNSSVGTIAYMSPERINSDLNQGQYNGYAGDIWSFGVSILEFYLGRFPLAVERPGDWASLMCAICMAQPPEAPPTASPEFRHFIACCLQREARKRWTAAALLEHAFITKKNGATQYQNPPAHHQNLRQLLPPPPLHPSSLS 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 21058760 21060484 - Hsped.02g15870.1 Hepe02g1587 563088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1587 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g1587 377 Pfam Protein kinase domain 88 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1587 377 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 77 347 - GO:0000165(PANTHER)|GO:0004708(PANTHER)
Hepe02g1587 377 Gene3D Transferase(Phosphotransferase) domain 1 170 363 - -
Hepe02g1587 377 ProSiteProfiles Protein kinase domain profile. 88 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1587 377 CDD PKc_MAPKK_plant_like 86 345 - -
Hepe02g1587 377 FunFam Mitogen-activated protein kinase 2 168 354 - -
Hepe02g1587 377 MobiDBLite consensus disorder prediction 1 81 - -
Hepe02g1587 377 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524(InterPro)
Hepe02g1587 377 SMART serkin_6 88 343 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g1587 377 MobiDBLite consensus disorder prediction 362 377 - -
Hepe02g1587 377 MobiDBLite consensus disorder prediction 349 377 - -
Hepe02g1587 377 Gene3D Phosphorylase Kinase; domain 1 72 167 - -
Hepe02g1587 377 SUPERFAMILY Protein kinase-like (PK-like) 66 366 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1587 Hepe-Chr2:21058760 Hepe07g2336 Hepe-Chr7:67729766 8.68e-100 dispersed
Hepe02g1587 Hepe-Chr2:21058760 Hepe02g1784 Hepe-Chr2:25901475 9.33e-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72568 PF00069 Pkinase 1.40E-60 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1587 K13413 - csv:101219669 625.55