Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1648 ATGTCCATCCTGCCTTCACAAATCCAGGGTTCCACTTCAGCTTCTTCTTCTCCAGCTTCCTCTCTAAACCCTAATTCCCACCATGGACCCGACCCCTTTTTCTCTCAATCCCCTCCTTCGCATTCCTTTCGATCCATACGGATCTCCGATCCTCAATCTTCTTCTCTCCGGGATTCCTCCAACGTTTCAGGCCCGTCGTCTCAACCTGCAAATGATGCTGAATCTTCCAAGAAGGTGAGTGAATTAGAGACCCTGAATGAAATGAAGATGCCAGCTCGTCAAAACACTGAAACCCATTTGCAGTGCCAATCTGGCGGACAAGAGGGTGGATCAGTCCTGCCTGGGAGTAAAATATCATCTCCTCTAATTTCTTCTCATGATCAACAAAGTGCTAGGTCTGCAAACTCTCATGGCAACAACAAACGCTCAGCTGGAAGAAAAGCCCAAATCACAAATGGCAACCATTTGCTTAATTTTCAGTATGATCCCATTTCTCGGCCTCATCCTCGAGCCAGAGCTCCTCCTCCGAGAAGGCCGCATAAGATAAAGCCATACAACAAGGATCTCTTTCTCCAGGCTAATTACAAATTTGTGGTATTAGATTCAGGTTATCATACACCTGAATATTTGGATCCTGATAAAATGCTGCGTTGGGAGGATATCATATGCGTAAGGTATTCTACACCATCGTTGGTTCAATGTCCTATTTGTCTGGAACATCCACTCTGTCCTCAAATTACCTCATGTGGACATATTTATTGTTTCCCATGCATTTTGAGGTACCTGTTAATGGGCAAGGAGGATCATAAAGGTGACTGCTGGAAAAAATGCCCTTTGTGTTTTGTGATGTTGTCTCCGAAGGATTTATACACCGTCCACATTGAGCTTTTGAAGCAATATTCTGTTGGTGATACTATAGATTTTATGCTTTTAACTCGGCAGAAAAATTCATTCACCTTATCATTCAAGGATAAACAAGAGGATGAAATCAAGTCAAGTGACAACGATGAAATCTATGATTCTTTTTCGAAGTTTATATTTACATCTGATGTGGATCTCTCAGTGCGGAAAGCGATATCTGATCTAGATGCTTGGTTAGCAAAAGCAGAAGCAGGGCAAGTAGACGACCTCGAAAAGCTTCCATATGTTTGTGCTGCTTTGGAACAACTGGAGCAGAGAAAGAAGTATTGGAATGAACATCAGGCTTGTTTTAAGCACGATGACTGTCAGATAGGATCTCATGTGCTCCTGCCAACTGATAGTCTTAGCAATGCTGGTCCTGGAGCATGCAGTTCTAGACATGAGGCTTCTTCCATTGATATTAATGATGGTTGCAAATTTTCAGGAAATATAGTGCAAGATAAGTTGGATTATTCTACTCCTGTGGGTCAGACTGAGGCTGTAGATGAATCTTTAGAACTCCAACAAAACTCAAACGAAATTAGAGATGCAAAGGACAAGGACTCGTACAATTTTTACCAGGCTACCGATGGCCAGCATATCATTCTCCATCCATTAAACATGAAGTGTCTTTTACAACATTATGGGAGTTACGATAGGCTGCCACTCAGAATAAGTGGAAAGATTTTAGAATTTGAAACAGTGACCCAGACTGAGGCCACAAGGAGGCGTTATCGATACTTAAGTCATTTTTCTTTAACAACATCATTTCAGCTTTGTGAAATTGATTTGACCAACCTATTGCCTTCGTCCTCCATGATTCCTTTCATGGATGAGATAAAGAAGCGTGAGAAACAGAGGAAACAACTTGCAAAAAAGATGCAGAAGGAGAAGATTAAAGAAGAAGCTGCTTCATCGTGCTCTTCGTCAATGACGGCCAGTTCAGGACATTCCTATTGTTACGACACTCCAAAGCTTTCCCTGGATGACTTTGAAGCTTTAGGAAGTTCTCCTGTGACATCGTCGAGCCCTCCTGTTGGGGGGAGGCTTCTGTTCTCGAGCGTTACAAGACTTGGCTTCGCTGCCGCACATGATTCTCCATCCTTGAGAACTGAGGAAACTGATTCTCTGCACGTTAATGAAGTGAAAAGTGATTTATCTGGTGCCAATGACATACAGAATGCAACCCCATCATTTGCAAACGTTATATCGAGAGCGAAGTCTGGGGGAAGTATGGCATCTCCAAAGGCGAATGAAGTGGGGAAGAAGGGAAAGAAACCAAGTCGAGTTCTGTTATCCACGGCGGGTGGTCGCCGCTATTGA 2223 43.09 MSILPSQIQGSTSASSSPASSLNPNSHHGPDPFFSQSPPSHSFRSIRISDPQSSSLRDSSNVSGPSSQPANDAESSKKVSELETLNEMKMPARQNTETHLQCQSGGQEGGSVLPGSKISSPLISSHDQQSARSANSHGNNKRSAGRKAQITNGNHLLNFQYDPISRPHPRARAPPPRRPHKIKPYNKDLFLQANYKFVVLDSGYHTPEYLDPDKMLRWEDIICVRYSTPSLVQCPICLEHPLCPQITSCGHIYCFPCILRYLLMGKEDHKGDCWKKCPLCFVMLSPKDLYTVHIELLKQYSVGDTIDFMLLTRQKNSFTLSFKDKQEDEIKSSDNDEIYDSFSKFIFTSDVDLSVRKAISDLDAWLAKAEAGQVDDLEKLPYVCAALEQLEQRKKYWNEHQACFKHDDCQIGSHVLLPTDSLSNAGPGACSSRHEASSIDINDGCKFSGNIVQDKLDYSTPVGQTEAVDESLELQQNSNEIRDAKDKDSYNFYQATDGQHIILHPLNMKCLLQHYGSYDRLPLRISGKILEFETVTQTEATRRRYRYLSHFSLTTSFQLCEIDLTNLLPSSSMIPFMDEIKKREKQRKQLAKKMQKEKIKEEAASSCSSSMTASSGHSYCYDTPKLSLDDFEALGSSPVTSSSPPVGGRLLFSSVTRLGFAAAHDSPSLRTEETDSLHVNEVKSDLSGANDIQNATPSFANVISRAKSGGSMASPKANEVGKKGKKPSRVLLSTAGGRRY 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22270898 22278732 + Hsped.02g16480.1 Hepe02g1648 563149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1648 740 MobiDBLite consensus disorder prediction 1 75 - -
Hepe02g1648 740 MobiDBLite consensus disorder prediction 1 80 - -
Hepe02g1648 740 SMART ring_2 234 280 IPR001841 -
Hepe02g1648 740 MobiDBLite consensus disorder prediction 95 183 - -
Hepe02g1648 740 Pfam Zinc finger, C3HC4 type (RING finger) 234 280 IPR018957 GO:0046872(InterPro)
Hepe02g1648 740 Coils Coil 577 600 - -
Hepe02g1648 740 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 334 IPR013083 -
Hepe02g1648 740 ProSiteProfiles Zinc finger RING-type profile. 234 280 IPR001841 -
Hepe02g1648 740 MobiDBLite consensus disorder prediction 95 159 - -
Hepe02g1648 740 CDD RING-HC_RNF10 232 289 - -
Hepe02g1648 740 MobiDBLite consensus disorder prediction 706 740 - -
Hepe02g1648 740 ProSitePatterns Zinc finger RING-type signature. 249 258 IPR017907 -
Hepe02g1648 740 PANTHER RING FINGER 10 FAMILY MEMBER 70 740 IPR039739 GO:0000976(PANTHER)|GO:0045944(PANTHER)
Hepe02g1648 740 FunFam RING finger protein 10 227 295 - -
Hepe02g1648 740 SUPERFAMILY RING/U-box 229 293 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1648 Hepe-Chr2:22270898 Hepe05g0517 Hepe-Chr5:7080281 1.44e-06 dispersed
Hepe02g1648 Hepe-Chr2:22270898 Hepe01g1379 Hepe-Chr1:79015205 1.96e-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1648 K26979 - csv:101203987 1216.83