Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g1651 ATGCTTCCCAAATCCACCGGAATCCTCTGGCTCGACGGCGACCATGACGACGCCACTTCTTGGACCAGAACCACCAACCACCACCACCACCACGACGACATCTCCATTGCTGCCGCTTCCATTTCCTCTTTCAAATCCATGCTCGATTCCGACTGGTACATCAACTCTTCTACTACTAATCCTCCTCCTCCTCCTCCTCCTCTCAATCCTTCTCACCTTGATTTCCATTCCGACATTATTCGACATCTTCCTTTCTCCTCCAATCCTACTGATAACTTCCTCCTACACTCCATAGATTCCTCCTCTTCCTGCTCTCCTTCCCAGCCTTTTGCTCTCGATCCTTCCCATTCCCATTCCCACTCCATCTTGCCTCCTCATAAATCCTGTTTCTCTTCTCTTCTTAATGTCGTTTGCGGCACTAATTTTGATAATGCCTTCGATTTGCCCGGAGAAACTGCCCTGCTTGGATCTTACCAAGGGAATCAACCTTCCATGGGATTCACCGGCATTTCCTCTCTTCCTCTAATCGCTAATCAGGAACTTACCTTAAACAACTCCGACTTTCCGCTCGCCGATAATCCCCCCTCATTCGCCGCTGGATTTAATCCTGCACCTGCCTTCCAGAGCTTCGATGCCTGCGGGAATGCTCTGTTTCAGAACAGGTCTAAGGTTTTGAGACCTCTCCAAGTGTTCCCGCAGGTCGGCGCGCAGCCGACGCTCTTCCAGAAGCGGGCGGCGCATCGAGTTGGCTCTGCTGGAGTTGATAAACTGGAGAATTTGGAGGTTTCTGGTTTGAAATTAGGAGAAGGCTCCATGTGGACGCCGAATTTTGAGAAGCTGAGGAACAAGAACGGCGACGAGGACTTTGAGGACGGCAGCATGGATGTTTCTCGCTTCAATTACGATTCCGACGAAGCCAATGAGTATAATAAGCTGGAGGACAATGTTAATGCTAAAAACTGCGGAAGCAATTCCAATGCCAACAGTACTGTAACCGGCGGAGACCAGAAGGGGAAGAAGAAGGGGTTGCCGGCGAAAAATCTCATGGCGGAGCGGCGGCGGAGAAAGAAGCTTAATGATAGACTTTACATGCTTAGGTCCGTCGTACCCAAAATAAGCAAGATGGATAGAGCTTCAATACTTGGAGACGCCATTGATTACTTGAAGGAGCTTCTTCAAAGGATAAATGATCTTCATAATGAACTTGAGTCATCGACTCCTCCTGGTTCTTTGTTGCAGCCTTCTTCAAGCTTTCACCCTTTGACGCCGACTCTGCCGACTCTTCCCTGTCGTGTCAAAGAGGAGCTGTGTCCAAGCTCCTTGTCCAGCCCCAAAACACAGCCTGCAAGGGTTGAAGTCCGAGTCAGAGAAGGCAGGGCTGTCAATATTCACATGTTTTGTTCTCGCAAGCCGGGTCTATTGCTATCCACCATGAGGGCTCTGGATAACCTCGGCTTGGACATCCAACAAGCTGTAATCAGCTGTTTCAATGGATTTGCTTTAGACGTGTTTCGAGCTGAGCAATCCAAGGAAGGTCAGGAGATCTTACCTGAGCAAATAAAAGCAGTGCTGTTGGATTCAGCTGGTTTACATGGTGTTATTTAA 1605 49.03 MLPKSTGILWLDGDHDDATSWTRTTNHHHHHDDISIAAASISSFKSMLDSDWYINSSTTNPPPPPPPLNPSHLDFHSDIIRHLPFSSNPTDNFLLHSIDSSSSCSPSQPFALDPSHSHSHSILPPHKSCFSSLLNVVCGTNFDNAFDLPGETALLGSYQGNQPSMGFTGISSLPLIANQELTLNNSDFPLADNPPSFAAGFNPAPAFQSFDACGNALFQNRSKVLRPLQVFPQVGAQPTLFQKRAAHRVGSAGVDKLENLEVSGLKLGEGSMWTPNFEKLRNKNGDEDFEDGSMDVSRFNYDSDEANEYNKLEDNVNAKNCGSNSNANSTVTGGDQKGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRINDLHNELESSTPPGSLLQPSSSFHPLTPTLPTLPCRVKEELCPSSLSSPKTQPARVEVRVREGRAVNIHMFCSRKPGLLLSTMRALDNLGLDIQQAVISCFNGFALDVFRAEQSKEGQEILPEQIKAVLLDSAGLHGVI 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 22340527 22343980 - Hsped.02g16510.1 Hepe02g1651 563152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g1651 534 SMART finulus 348 397 IPR011598 GO:0046983(InterPro)
Hepe02g1651 534 CDD ACT_UUR-ACR-like 463 523 - -
Hepe02g1651 534 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 342 391 IPR011598 GO:0046983(InterPro)
Hepe02g1651 534 Pfam Helix-loop-helix DNA-binding domain 349 391 IPR011598 GO:0046983(InterPro)
Hepe02g1651 534 MobiDBLite consensus disorder prediction 316 335 - -
Hepe02g1651 534 ProSiteProfiles ACT domain profile. 462 534 IPR002912 -
Hepe02g1651 534 MobiDBLite consensus disorder prediction 316 342 - -
Hepe02g1651 534 Pfam Plant bHLH transcription factor, ACT-like domain 451 524 IPR054502 -
Hepe02g1651 534 CDD bHLH_AtAMS_like 345 416 - -
Hepe02g1651 534 FunFam BHLH transcription factor 338 406 - -
Hepe02g1651 534 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 299 529 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe02g1651 534 Gene3D - 336 406 IPR036638 GO:0046983(InterPro)
Hepe02g1651 534 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 415 IPR036638 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1651 Hepe-Chr2:22340527 Hepe07g2082 Hepe-Chr7:65083710 8.55e-152 dispersed
Hepe02g1651 Hepe-Chr2:22340527 Hepe10g0404 Hepe-Chr10:4507374 4.37e-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55053 PF00010 HLH 2.20E-09 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g1651 - - - 0.0